omicron-sgtf-forecast - Update text for post-Christmas changes

• Updated the summary text to reflect post-Christmas changes.
• Updated the time at 95% Omicron plot to include median estimates. This was needed to prevent estimates disappearing when uncertainty was less than or equal to a day.
• Fixed a bug for the centred 7-day moving average where partially complete case data was included for regions. This impacted on the data overview plot.

Full Changelog: https://github.com/epiforecasts/omicron-sgtf-forecast/compare/v1.2.0...reportv1.3.0

- R
Published by seabbs about 4 years ago

omicron-sgtf-forecast - Update text for post-Christmas

• Updated the summary text to reflect post-Christmas changes.
• Updated the time at 95% Omicron plot to include median estimates. This was needed to prevent estimates disappearing when uncertainty was less than or equal to a day.
• Fixed a bug for the centred 7-day moving average where partially complete case data was included for regions. This impacted on the data overview plot.

Full Changelog: https://github.com/epiforecasts/omicron-sgtf-forecast/compare/v1.2.0...v1.3.0

- R
Published by seabbs about 4 years ago

omicron-sgtf-forecast - Switch archiving to be date of access

• Updated data and results archiving to be by date of access rather than by the maximum date available in the data. This has the download of making an update occur every day the pipeline runs regardless of if the data has been updated but the upside of protecting archived data from retrospective updates.

• Updates dating of all archived data and results to be by date of access rather than by maximum available date in the data.

- R
Published by seabbs about 4 years ago

omicron-sgtf-forecast - Switch archiving to be date of access

• Updated data and results archiving to be by date of access rather than by the maximum date available in the data. This has the download of making an update occur every day the pipeline runs regardless of if the data has been updated but the upside of protecting archived data from retrospective updates.

• Updates dating of all archived data and results to be by date of access rather than by maximum available date in the data.

What's Changed

• Feature: make data updating more robust by @seabbs in https://github.com/epiforecasts/omicron-sgtf-forecast/pull/21

Full Changelog: https://github.com/epiforecasts/omicron-sgtf-forecast/compare/v1.1.0...v1.2.0

- R
Published by seabbs about 4 years ago

omicron-sgtf-forecast - Cumulative incidence corrected

• Thanks to Ritwik Priya for spotting an issue with our cumulative incidence as a percentage of the population estimates. Unfortunately, our code accidently combined all cases types (Omicron, non-Omicron, and combined) when making the calculating leading to estimates roughly 3 times higher than they should have been.
• Update the region order of the cumulative incidence plot to match other regions.

- R
Published by seabbs about 4 years ago

omicron-sgtf-forecast - Cumulative incidence corrected

• Thanks to Ritwik Priya for spotting an issue with our cumulative incidence as a percentage of the population estimates. Unfortunately, our code accidently combined all cases types (Omicron, non-Omicron, and combined) when making the calculating leading to estimates roughly 3 times higher than they should have been.
• Update the region order of the cumulative incidence plot to match other regions.

What's Changed

• Bug: Corrects cumulative incidence by @seabbs in https://github.com/epiforecasts/omicron-sgtf-forecast/pull/20 Full Changelog: https://github.com/epiforecasts/omicron-sgtf-forecast/compare/v1.0.0...v1.1.0

- R
Published by seabbs about 4 years ago

omicron-sgtf-forecast - SPI-M submission

Report as submitted to SPI-M with automation notes and tweaks.

- R
Published by seabbs about 4 years ago

omicron-sgtf-forecast - SPI-M submission

What's Changed

• Minor changes by @sbfnk in https://github.com/epiforecasts/omicron-sgtf-forecast/pull/17
• Add summary plot by @kathsherratt in https://github.com/epiforecasts/omicron-sgtf-forecast/pull/16
• Remove point estimates and automate by @seabbs in https://github.com/epiforecasts/omicron-sgtf-forecast/pull/18

New Contributors

• @sbfnk made their first contribution in https://github.com/epiforecasts/omicron-sgtf-forecast/pull/17

Full Changelog: https://github.com/epiforecasts/omicron-sgtf-forecast/compare/v0.0.1...v1.0.0

- R
Published by seabbs about 4 years ago

omicron-sgtf-forecast - Initial report release

Full Changelog: https://github.com/epiforecasts/omicron-sgtf-forecast/commits/reportv0.0.1

- R
Published by seabbs about 4 years ago

omicron-sgtf-forecast - Initial analysis release

What's Changed

• Server by @seabbs in https://github.com/epiforecasts/omicron-sgtf-forecast/pull/1
• Latest changes by @kathsherratt in https://github.com/epiforecasts/omicron-sgtf-forecast/pull/2
• increase figure size by @kathsherratt in https://github.com/epiforecasts/omicron-sgtf-forecast/pull/3
• Report read through by @seabbs in https://github.com/epiforecasts/omicron-sgtf-forecast/pull/4
• Feature: link estimates with plots by @seabbs in https://github.com/epiforecasts/omicron-sgtf-forecast/pull/9
• minor text check by @kathsherratt in https://github.com/epiforecasts/omicron-sgtf-forecast/pull/15
• Text + plots by @seabbs in https://github.com/epiforecasts/omicron-sgtf-forecast/pull/14

New Contributors

• @seabbs made their first contribution in https://github.com/epiforecasts/omicron-sgtf-forecast/pull/1
• @kathsherratt made their first contribution in https://github.com/epiforecasts/omicron-sgtf-forecast/pull/2

Full Changelog: https://github.com/epiforecasts/omicron-sgtf-forecast/commits/v0.0.1

- R
Published by seabbs about 4 years ago