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genomics-r-intro

Intro to R and RStudio for Genomics

https://github.com/datacarpentry/genomics-r-intro

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (4.9%) to scientific vocabulary

Keywords

beta carpentries data-carpentry data-visualisation data-visualization data-wrangling english genomics lesson r
Last synced: 4 months ago · JSON representation ·

Repository

Intro to R and RStudio for Genomics

Basic Info
Statistics
  • Stars: 30
  • Watchers: 10
  • Forks: 92
  • Open Issues: 12
  • Releases: 1
Topics
beta carpentries data-carpentry data-visualisation data-visualization data-wrangling english genomics lesson r
Created almost 8 years ago · Last pushed 5 months ago
Metadata Files
Readme Contributing License Code of conduct Citation Authors Zenodo

README.md

Intro to R and RStudio for Genomics

Lesson in development.

How to contribute?

This repository uses GitHub Actions to build and deploy the lesson.

Contributions and Pull Requests should be made against the main branch. After your contribution is merged, Travis will take care of using R to process the Rmd files into markdown files, and push them into the gh-branch which GitHub uses to serve the lesson website.

Individual episode files are in the _episodes_rmd folder.

Owner

  • Name: Data Carpentry
  • Login: datacarpentry
  • Kind: organization
  • Email: team@carpentries.org

Workshops teaching scientists basic skills for retrieving, viewing, managing, and manipulating data in an open and reproducible way.

Citation (CITATION) 

FIXME: describe how to cite this lesson.

GitHub Events

Total
  • Issues event: 11
  • Watch event: 4
  • Delete event: 18
  • Issue comment event: 24
  • Push event: 88
  • Pull request review event: 1
  • Pull request event: 28
  • Fork event: 4
  • Create event: 22
Last Year
  • Issues event: 11
  • Watch event: 4
  • Delete event: 18
  • Issue comment event: 24
  • Push event: 88
  • Pull request review event: 1
  • Pull request event: 28
  • Fork event: 4
  • Create event: 22

Issues and Pull Requests

Last synced: 4 months ago

All Time
  • Total issues: 0
  • Total pull requests: 8
  • Average time to close issues: N/A
  • Average time to close pull requests: 9 days
  • Total issue authors: 0
  • Total pull request authors: 3
  • Average comments per issue: 0
  • Average comments per pull request: 0.5
  • Merged pull requests: 4
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 8
  • Average time to close issues: N/A
  • Average time to close pull requests: 9 days
  • Issue authors: 0
  • Pull request authors: 3
  • Average comments per issue: 0
  • Average comments per pull request: 0.5
  • Merged pull requests: 4
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • naupaka (11)
  • ytakemon (10)
  • JasonJWilliamsNY (6)
  • javibio-git (1)
  • jananiravi (1)
  • JSBoey (1)
  • jessepharrison (1)
  • sstevens2 (1)
  • SaskiaFreytag (1)
Pull Request Authors
  • carpentries-bot (18)
  • naupaka (14)
  • JasonJWilliamsNY (7)
  • ytakemon (2)
  • maneesha (1)
Top Labels
Issue Labels
help wanted (1) beta release 2021 (1) type:bug (1)
Pull Request Labels
type: package cache (14) type: template and tools (4)

Dependencies

Gemfile rubygems
  • github-pages >= 0 development
  • webrick >= 1.6.1
.github/workflows/template.yml actions
  • actions/cache v2 composite
  • actions/checkout master composite
  • actions/setup-python v2 composite
  • r-lib/actions/setup-r v2 composite
  • ruby/setup-ruby v1 composite
.github/workflows/website.yml actions
  • actions/cache v2 composite
  • actions/checkout master composite
  • actions/setup-python v2 composite
  • r-lib/actions/setup-r v2 composite
  • ruby/setup-ruby v1 composite