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Recent Releases of sdc-bids-smri

sdc-bids-smri - SDC-BIDS-sMRI v2.0.0

SDC-BIDS-sMRI v2.0.0: Carpentries Workbench infrastructure

Summary of changes: - Transition to Carpentries Workbench infrastructure.

First release after transitioning to the new Carpentries Workbench infrastructure.

Full Changelog: https://github.com/carpentries-incubator/SDC-BIDS-sMRI/compare/v1.0.0...v2.0.0

- Jupyter Notebook
Published by jhlegarreta about 2 years ago

sdc-bids-smri - SDC-BIDS-sMRI v1.0.0

SDC-BIDS-sMRI v1.0.0: initial release.

Summary of changes: - Initial release: all commits since the beginning of the development.

Last release prior to transitioning to the new Carpentries Workbench infrastructure.

What's Changed

  • Quantification episode intro and skeleton by @neurorepro in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/1
  • Add tissue segmentation and visualization by @neurorepro in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/2
  • Update introduction and add second part of the quantification episode by @neurorepro in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/4
  • 5statistical analysis1 by @devdinie in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/3
  • Lesson 1 and 2 notebooks added by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/5
  • added spatial normalization notebook by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/6
  • @devdinie 5episode520visualization_Examples1 by @devdinie in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/7
  • Update all but last section to be finished by @neurorepro in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/8
  • Add some minor changes by @neurorepro in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/9
  • Added reproducibility notebook and related data by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/10
  • All but final FS stats for episode 4. Add notebook. by @neurorepro in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/11
  • Move notebook to the right folder by @neurorepro in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/12
  • updated index.md by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/13
  • updated 01_episode with python snippets by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/14
  • removed VBM sections by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/15
  • updated episode 2 with python snippets by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/16
  • updated episode 3 with more images and snippets by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/17
  • updated setup.md by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/18
  • Updated episode 3 by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/22
  • 5Updatestatistical_analysis by @devdinie in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/19
  • 5_Updating preprocessing for VBM - complete by @devdinie in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/23
  • 5_ update formatting and correcting errors from last merge by @devdinie in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/25
  • 5_ updating broken link & mialigned fig by @devdinie in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/26
  • Updateed QC and reproducibility lessons by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/27
  • file and directory renaming to be consistent by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/28
  • more renaming and update to course_flow figure by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/29
  • fixed paths in statistical analysis by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/30
  • fixed README lesson titles by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/31
  • fixed episode names in headers by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/32
  • added local data by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/35
  • Add subject examplar by @neurorepro in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/36
  • completed cortical thickness analysis with AOMIC data by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/37
  • Changed notebooks to use test subjects from AOMIC by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/38
  • Changed notebooks to use test subjects from AOMIC by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/39
  • updated episode 1 with mprage info by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/40
  • minor changes to notebooks by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/41
  • Add initial changes of quantification episode. Add fmriprep derivatives. by @neurorepro in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/42
  • added fMRIPrep example and more BIDS info in notebooks by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/44
  • Iquant by @neurorepro in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/43
  • updated course flow images to match name changes by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/45
  • fixed bunch of typos by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/46
  • Iquant by @neurorepro in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/47
  • Clean both superfluous notebooks and data. Add minor changes to both … by @neurorepro in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/48
  • added pybids by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/49
  • Iquant by @neurorepro in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/50
  • minor changes to figures by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/51
  • Add cortical thickness stat analysis by @neurorepro in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/52
  • Add remaining content of stat episode and code by @neurorepro in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/53
  • Add tree to binder by @neurorepro in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/54
  • Fix typo. Add solution to challenge. by @neurorepro in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/55
  • Iquant by @neurorepro in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/56
  • Update README.md by @jbpoline in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/57
  • Updated email by @nikhil153 in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/60
  • urgent: fix workflows by @zkamvar in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/58

New Contributors

  • @neurorepro made their first contribution in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/1
  • @devdinie made their first contribution in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/3
  • @nikhil153 made their first contribution in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/5
  • @jbpoline made their first contribution in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/57
  • @zkamvar made their first contribution in https://github.com/carpentries-incubator/SDC-BIDS-sMRI/pull/58

Full Changelog: https://github.com/carpentries-incubator/SDC-BIDS-sMRI/commits/v1.0.0

- Jupyter Notebook
Published by jhlegarreta about 2 years ago