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bioc-intro

Bioconductor data science introduction

https://github.com/carpentries-incubator/bioc-intro

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
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    Academic publication links
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.8%) to scientific vocabulary

Keywords

beta bioconductor carpentries-incubator english hacktoberfest lesson life-sciences r
Last synced: 6 months ago · JSON representation ·

Repository

Bioconductor data science introduction

Basic Info
Statistics
  • Stars: 27
  • Watchers: 11
  • Forks: 34
  • Open Issues: 20
  • Releases: 0
Topics
beta bioconductor carpentries-incubator english hacktoberfest lesson life-sciences r
Created over 5 years ago · Last pushed 6 months ago
Metadata Files
Readme Contributing License Code of conduct Citation Authors

README.md

Introduction to genomic data analysis with R and Bioconductor

Create a Slack Account with us

Contributing

We welcome all contributions to improve the lesson! Maintainers will do their best to help you if you have any questions, concerns, or experience any difficulties along the way.

We'd like to ask you to familiarize yourself with our Contribution Guide and have a look at the more detailed guidelines on proper formatting, ways to render the lesson locally, and even how to write new episodes.

Please see the current list of [issues][FIXME] for ideas for contributing to this repository. For making your contribution, we use the GitHub flow, which is nicely explained in the chapter Contributing to a Project in Pro Git by Scott Chacon.

Look for the tag good\_first\_issue. This indicates that the maintainers will welcome a pull request fixing this issue.

Useful links

Lesson team

This lesson has been developed and is current maintained by

  • Laurent Gatto (maintainer)
  • Charlotte Soneson
  • Jenny Drnevich
  • Robert Castelo
  • Kevin Rue-Albert

We would also like to acknowledge the contributions of:

  • Oliver Crook, Sarah Kaspar, Nick Hirschmueller, Lisa Breckels and Maria Doyle for their contributions during the Bioconductor introduction workshop in Heidelberg, as part of EuroBioc2021 |> 2022.
  • Axelle Loriot, Marco Chiapelle, Manon Martin and Toby Hodges for various contributions and discussions.
  • lmsimp, alorot, manonmartin, mchiapello, stavares843, JennyZadeh, csdaw, ninja-1337, fursham-h, lagerratrobe, fmichonneau, federicomarini, tobyhodges for pull requests.

If we have contributed but we missed you, apologies, and feel free to add yourself with a PR.

Authors

A list of contributors to the lesson can be found in AUTHORS

Citation

To cite this lesson, please consult with CITATION

Testing locally

To test locally, run the following in the lessons directory:

r sandpaper::serve()

For more details, see the workbench installation instructions.

Owner

  • Name: carpentries-incubator
  • Login: carpentries-incubator
  • Kind: organization

Citation (CITATION) 

FIXME: describe how to cite this lesson.

GitHub Events

Total
  • Issues event: 2
  • Delete event: 16
  • Issue comment event: 30
  • Push event: 173
  • Pull request event: 39
  • Fork event: 6
  • Create event: 17
Last Year
  • Issues event: 2
  • Delete event: 16
  • Issue comment event: 30
  • Push event: 173
  • Pull request event: 39
  • Fork event: 6
  • Create event: 17

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 48
  • Total pull requests: 85
  • Average time to close issues: about 2 months
  • Average time to close pull requests: 2 days
  • Total issue authors: 10
  • Total pull request authors: 25
  • Average comments per issue: 1.56
  • Average comments per pull request: 1.05
  • Merged pull requests: 71
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 20
  • Average time to close issues: N/A
  • Average time to close pull requests: 1 day
  • Issue authors: 1
  • Pull request authors: 4
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.8
  • Merged pull requests: 14
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • lgatto (29)
  • ManonMartin (5)
  • jdrnevich (5)
  • kozo2 (2)
  • tobyhodges (2)
  • mchiapello (1)
  • denver3500 (1)
  • csoneson (1)
  • mblue9 (1)
  • csmagnano (1)
  • carpentries-bot (1)
Pull Request Authors
  • lgatto (19)
  • carpentries-bot (12)
  • csoneson (7)
  • tobyhodges (6)
  • lmsimp (6)
  • mchiapello (5)
  • aloriot (4)
  • jdrnevich (4)
  • ManonMartin (3)
  • kozo2 (2)
  • mblue9 (2)
  • zkamvar (2)
  • shbrief (1)
  • almutlue (1)
  • chiasinL (1)
Top Labels
Issue Labels
good first issue (8) help wanted (8) type: template and tools (1)
Pull Request Labels
type: package cache (8) type: template and tools (4)

Dependencies

.github/workflows/pr-close-signal.yaml actions
  • actions/upload-artifact v3 composite
.github/workflows/pr-comment.yaml actions
  • actions/checkout v3 composite
  • carpentries/actions/check-valid-pr main composite
  • carpentries/actions/comment-diff main composite
  • carpentries/actions/download-workflow-artifact main composite
.github/workflows/pr-post-remove-branch.yaml actions
  • carpentries/actions/download-workflow-artifact main composite
  • carpentries/actions/remove-branch main composite
.github/workflows/pr-preflight.yaml actions
  • carpentries/actions/check-valid-pr main composite
  • carpentries/actions/comment-diff main composite
.github/workflows/pr-receive.yaml actions
  • actions/checkout v3 composite
  • actions/upload-artifact v3 composite
  • carpentries/actions/check-valid-pr main composite
  • carpentries/actions/setup-lesson-deps main composite
  • carpentries/actions/setup-sandpaper main composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/sandpaper-main.yaml actions
  • actions/checkout v3 composite
  • carpentries/actions/setup-lesson-deps main composite
  • carpentries/actions/setup-sandpaper main composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/update-cache.yaml actions
  • actions/checkout v3 composite
  • carpentries/actions/check-valid-credentials main composite
  • carpentries/actions/update-lockfile main composite
  • carpentries/create-pull-request main composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/update-workflows.yaml actions
  • actions/checkout v3 composite
  • carpentries/actions/check-valid-credentials main composite
  • carpentries/actions/update-workflows main composite
  • carpentries/create-pull-request main composite