fair-for-busy-biologists

A short course on FAIR and data managment for biomedical research

https://github.com/carpentries-incubator/fair-for-busy-biologists

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Committers with academic emails
    2 of 2 committers (100.0%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (13.3%) to scientific vocabulary

Keywords

alpha biomedical biomedical-data-science carpentries-incubator data-management english fair lesson
Last synced: 6 months ago · JSON representation ·

Repository

A short course on FAIR and data managment for biomedical research

Basic Info
Statistics
  • Stars: 1
  • Watchers: 3
  • Forks: 0
  • Open Issues: 1
  • Releases: 0
Topics
alpha biomedical biomedical-data-science carpentries-incubator data-management english fair lesson
Created almost 2 years ago · Last pushed 6 months ago
Metadata Files
Readme Contributing License Code of conduct Citation Authors

README.md

FAIR for busy biologists Lesson

General information

This lesson serves as the cornerstone for effectively integrating Open Science and FAIR principles into the management of biological research data.

While our original lesson, FAIR in bio practice, has been highly praised by participants and received overwhelmingly positive feedback, its extensive duration spanning over 20 hours has resulted in low workshop participation rates.

Drawing from our insights and experiences, we have refined and condensed the content into a more accessible format. The updated version consists of two sessions, each lasting three hours, strategically focusing on essential skills and engaging exercises. This trimmed, streamlined approach aims to enhance the workshop experience and facilitate greater uptake among participants.

We the UoE BioRDM team have identified that a gap exists in the knowledge of how to apply FAIR principles to real-life day-to-day biological research. An understanding of the principles of good data management is just as important as the practicalities. Researchers must become conversant with the Open Science ethos, the Reproducible Research movement, and the FAIR principles, to explain their new skills and to recognize or evaluate them in their peers.

The overall goals of the lesson are: * To teach solid basic concepts in open science, FAIR guidelines and data management. * To teach how to be FAIR in practice. * To teach how to organize research workflows in such a way that it is easy to make biological research open, findable and reusable.

We are developing this lesson as part of the ED-DaSH consortium, supported by the "Data driven life science skills development - equipping society for the future" UKRI-MRC grant MR/V039075/1.

Ed_DaSH

Development status and contributing

The lesson is currently under active development. We welcome all contributions to improve the lesson! Maintainers will do their best to help you if you have any questions, concerns, or experience any difficulties along the way.

We'd like to ask you to familiarize yourself with our Contribution Guide and have a look at the [more detailed guidelines][lesson-example] on proper formatting, ways to render the lesson locally, and even how to write new episodes.

Please see the current list of [issues][FIXME] for ideas for contributing to this repository. For making your contribution, we use the GitHub flow, which is nicely explained in the chapter Contributing to a Project in Pro Git by Scott Chacon. Look for the tag good_first_issue. This indicates that the maintainers will welcome a pull request fixing this issue.

Maintainer(s)

Current maintainers of this lesson are

Authors

A list of contributors to the lesson can be found in AUTHORS

Citation

To cite this lesson, please consult with CITATION

Owner

  • Name: carpentries-incubator
  • Login: carpentries-incubator
  • Kind: organization

Citation (CITATION)

Zieliński T, Romanowski A, et al, "FAIR for busy biologists", 2024, https://github.com/carpentries-incubator/fair-for-busy-biologists

GitHub Events

Total
  • Issues event: 2
  • Watch event: 1
  • Delete event: 1
  • Member event: 1
  • Issue comment event: 9
  • Push event: 34
  • Pull request event: 3
  • Create event: 2
Last Year
  • Issues event: 2
  • Watch event: 1
  • Delete event: 1
  • Member event: 1
  • Issue comment event: 9
  • Push event: 34
  • Pull request event: 3
  • Create event: 2

Committers

Last synced: 12 months ago

All Time
  • Total Commits: 104
  • Total Committers: 2
  • Avg Commits per committer: 52.0
  • Development Distribution Score (DDS): 0.115
Past Year
  • Commits: 104
  • Committers: 2
  • Avg Commits per committer: 52.0
  • Development Distribution Score (DDS): 0.115
Top Committers
Name Email Commits
Tomasz Zielinski t****i@e****k 92
livia-scorza l****a@e****k 12
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 1
  • Total pull requests: 4
  • Average time to close issues: 6 days
  • Average time to close pull requests: about 4 hours
  • Total issue authors: 1
  • Total pull request authors: 1
  • Average comments per issue: 8.0
  • Average comments per pull request: 0.75
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 4
  • Average time to close issues: 6 days
  • Average time to close pull requests: about 4 hours
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 8.0
  • Average comments per pull request: 0.75
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • DanielThedie (1)
Pull Request Authors
  • carpentries-bot (4)
Top Labels
Issue Labels
Pull Request Labels
type: template and tools (4)

Dependencies

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.github/workflows/pr-receive.yaml actions
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.github/workflows/update-cache.yaml actions
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.github/workflows/update-workflows.yaml actions
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