good-enough-practices

Good Enough Practices in Scientific Computing

https://github.com/carpentries-lab/good-enough-practices

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
    Found 2 DOI reference(s) in README
  • Academic publication links
  • Committers with academic emails
    5 of 19 committers (26.3%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (12.3%) to scientific vocabulary

Keywords

carpentries-lab carpentry computing data data-management english helpwanted-list lesson novice peer-reviewed project-organisation stable version-control

Keywords from Contributors

carpentries-incubator pre-alpha workflows workflow-management bioinformatics metagenomics nextflow nf-core bulk-rna-seq rna-seq-analysis
Last synced: 6 months ago · JSON representation ·

Repository

Good Enough Practices in Scientific Computing

Basic Info
Statistics
  • Stars: 22
  • Watchers: 6
  • Forks: 21
  • Open Issues: 10
  • Releases: 2
Topics
carpentries-lab carpentry computing data data-management english helpwanted-list lesson novice peer-reviewed project-organisation stable version-control
Created almost 5 years ago · Last pushed 6 months ago
Metadata Files
Readme Contributing License Code of conduct Citation Authors Zenodo

README.md

The Carpentries Lab Review Status

Good Enough Practices in Scientific Computing: A Learning Module for Researchers

This repository contains a 3 hour carpentries format lesson covering Good Enough Practices in Scientific Computing (Wilson et al., 2017): "a set of good computing practices that every researcher can adopt, regardless of their current level of computational skill".

The workshop is targeted at a broad audience of researchers who want to learn how to be more efficient and effective in their data analysis and computing, whatever their career stage. Examples of our target audience are in learner profiles.

Contributing

We welcome all contributions to improve the lesson! Maintainers will do their best to help you if you have any questions, concerns, or experience any difficulties along the way.

We'd like to ask you to familiarize yourself with our Contribution Guide and have a look at the more detailed guidelines on proper formatting, ways to render the lesson locally, and even how to write new episodes.

Please see the current list of issues for ideas for contributing to this repository. For making your contribution, we use the GitHub flow, which is nicely explained in the chapter Contributing to a Project in Pro Git by Scott Chacon. Look for the tag good\_first\_issue. This indicates that the maintainers will welcome a pull request fixing this issue.

Maintainer(s)

We are developing this lesson in 2023, led by a team from Edinburgh Carpentries. This lesson development was led by the ED-DaSH consortium at The University of Edinburgh, as a collaboration between BioRDM and Edinburgh Carpentries. Ed-DaSH was supported by the "Data driven life science skills development - equipping society for the future" UKRI-MRC grant MR/V039075/1.

Current maintainers of this lesson are

  • Edward Wallace @ewallace
  • Alison Meynert @ameynert
  • Emma Wilson @emma-wilson
  • Allen Lee @alee

Authors

A list of contributors to the lesson can be found in AUTHORS

Citation

To cite this lesson, please consult with CITATION

Owner

  • Name: The Carpentries Lab
  • Login: carpentries-lab
  • Kind: organization

Citation (CITATION)

Wallace, E..W.J., Meynert, A., Zielinski. T., Romanowski. A., et. al., (2022). Good Enough Practices in Scientific Computing: A Lesson (Version 0.1.0) . https://doi.org/tbc

GitHub Events

Total
  • Release event: 1
  • Watch event: 5
  • Delete event: 9
  • Issue comment event: 10
  • Push event: 65
  • Pull request review event: 2
  • Pull request event: 12
  • Create event: 8
Last Year
  • Release event: 1
  • Watch event: 5
  • Delete event: 9
  • Issue comment event: 10
  • Push event: 65
  • Pull request review event: 2
  • Pull request event: 12
  • Create event: 8

Committers

Last synced: about 2 years ago

All Time
  • Total Commits: 227
  • Total Committers: 19
  • Avg Commits per committer: 11.947
  • Development Distribution Score (DDS): 0.687
Past Year
  • Commits: 101
  • Committers: 10
  • Avg Commits per committer: 10.1
  • Development Distribution Score (DDS): 0.604
Top Committers
Name Email Commits
Edward Wallace e****e 71
ameynert a****t@i****k 34
Tomasz Zielinski t****i@e****k 32
emma-wilson 5****n 16
MatthiasMimault 3****t 12
HeidiSeibold h****d@g****m 10
Edward Wallace e****e@g****m 9
Samuel Joseph Haynes 3****P 7
aromanowski g****o@g****m 6
Toby Hodges t****s@g****m 6
Allen Lee a****e 6
Zhian N. Kamvar z****r@g****m 6
Alison Meynert a****2@e****k 4
Flic Anderson F****n 2
Graeme Grimes G****s@G****m 2
ppxasjsm a****y@e****k 1
JenDaub 4****b 1
Lex Nederbragt l****t@i****o 1
jjyh 3****h 1
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: about 2 years ago

All Time
  • Total issues: 61
  • Total pull requests: 49
  • Average time to close issues: about 1 year
  • Average time to close pull requests: 25 days
  • Total issue authors: 10
  • Total pull request authors: 11
  • Average comments per issue: 1.51
  • Average comments per pull request: 0.55
  • Merged pull requests: 48
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 18
  • Pull requests: 26
  • Average time to close issues: 18 days
  • Average time to close pull requests: 6 days
  • Issue authors: 6
  • Pull request authors: 9
  • Average comments per issue: 1.0
  • Average comments per pull request: 0.58
  • Merged pull requests: 25
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • ewallace (43)
  • emma-wilson (4)
  • aromanowski (4)
  • alee (3)
  • ameynert (2)
  • FlicAnderson (1)
  • ckravit (1)
  • egountouna (1)
  • tobyhodges (1)
  • zkamvar (1)
Pull Request Authors
  • ewallace (29)
  • carpentries-bot (8)
  • tobyhodges (6)
  • ameynert (5)
  • emma-wilson (4)
  • alee (3)
  • aromanowski (1)
  • FlicAnderson (1)
  • HeidiSeibold (1)
  • zkamvar (1)
Top Labels
Issue Labels
help wanted (9) type:enhancement (5) type:discussion (4) good first issue (2) type:bug (1) type:formatting (1) high priority (1)
Pull Request Labels
type: template and tools (8)

Dependencies

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.github/workflows/pr-post-remove-branch.yaml actions
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.github/workflows/pr-preflight.yaml actions
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.github/workflows/pr-receive.yaml actions
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  • r-lib/actions/setup-pandoc v2 composite
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.github/workflows/sandpaper-main.yaml actions
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  • carpentries/actions/setup-sandpaper main composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/update-cache.yaml actions
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  • carpentries/actions/update-lockfile main composite
  • carpentries/create-pull-request main composite
  • r-lib/actions/setup-r v2 composite
.github/workflows/update-workflows.yaml actions
  • actions/checkout v3 composite
  • carpentries/actions/check-valid-credentials main composite
  • carpentries/actions/update-workflows main composite
  • carpentries/create-pull-request main composite