What's Changed

Preventing Greek name from crashing by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1048
Better invalid name logs by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1049
Fix paperqa/configs link in README.md by @chrisranderson in https://github.com/Future-House/paper-qa/pull/1051
Fixing all broken links, pymarkdown by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1052
chore(deps): lock file maintenance by @renovate[bot] in https://github.com/Future-House/paper-qa/pull/1053
chore(deps): chore(deps): update actions/checkout action to v5 @renovate[bot] in https://github.com/Future-House/paper-qa/pull/1058
chore(deps): chore(deps): update actions/download-artifact action to v5 by @renovate[bot] in https://github.com/Future-House/paper-qa/pull/1059
Moved mypy to use local hook to unsilence it on missing dependencies by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1055
Removed dead patch from test_add_clinical_trials_to_docs by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1056
Restored UnpaywallProvider by updating expected response by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1057
Refreshed test_crossref_journalquality_fields_filtering cassette by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1060
Updating journal_quality.csv from script by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1061
Better lookup failure message in Settings.from_name by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1064
Lower bibtex logging to debug by @mskarlin in https://github.com/Future-House/paper-qa/pull/1067
Fixed SearchIndex default index_directory being a default_factory by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1070
skip bibtex call to crossref by @mskarlin in https://github.com/Future-House/paper-qa/pull/1072
Adding EmptyDocsError failover to gen_answer by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1073
Removed a duplicate computation of body's filehash by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1074

Note @jamesbraza did a clean rebase of a few commits to beyond this release, so this CHANGELOG entry was manually constructed.

New Contributors

@chrisranderson made their first contribution in https://github.com/Future-House/paper-qa/pull/1051

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.28.0...v5.29.0

- Python
Published by jamesbraza 9 months ago

What's Changed

Added PyPDF package to mypy_path by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1036
Removed trailing whitespace from summary_json_system_prompt by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1037
Allow users to skip citation stripping from evidence by @mskarlin in https://github.com/Future-House/paper-qa/pull/1035
Re-raising original exception in clinical_trials tools by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1038
Fixed test_agent_types after Gemini 1.5 deprecation by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1043
Renamed a few more answer to session by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1042
Move context str generation into configurable function by @mskarlin in https://github.com/Future-House/paper-qa/pull/1039
chore(deps): lock file maintenance by @renovate[bot] in https://github.com/Future-House/paper-qa/pull/1045

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.27.0...v5.28.0

- Python
Published by jamesbraza 10 months ago

What's Changed

Expose answer evidence score cutoff as config by @mskarlin in https://github.com/Future-House/paper-qa/pull/1031
Support grouping contexts by question in the final context by @mskarlin in https://github.com/Future-House/paper-qa/pull/1032
Journal quality fixes by @mskarlin in https://github.com/Future-House/paper-qa/pull/1034
Avoiding citation prompt hallucinating doi.org URLs by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1033

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.26.0...v5.27.0

- Python
Published by mskarlin 10 months ago

What's Changed

Fixed aiohttp.ClientOSError crashing us by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1016
S2 also retrying 403's by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1017
Fixed _s2_get_with_retrying multiple values issue by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1018
chore(deps): lock file maintenance by @renovate[bot] in https://github.com/Future-House/paper-qa/pull/1020
Removed JSONType for Pydantic's equivalent JsonValue by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1022
Removed extra test test_can_read_normal_pdf_reader by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1019
uv workspace layout, broke out PyMuPDF by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1021
Created PyPDF reader package by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1023
Fixed Docs.aadd giving bad docname after upgrade by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1025
Removed dead code repopulate_doc_id_from_doi from DocDetails by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1024
Made DeprecationWarning on moved Settings more precise by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1027
Open sourced test of encode_id by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1030

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.25.0...v5.26.0

- Python
Published by jamesbraza 10 months ago

What's Changed

Sorting Doc.fields_to_overwrite_from_metadata serialization by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1010
Ensuring manifest deserialization works for non-primitive fields by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1011
Removing leading/trailing newlines from Context creation prompt by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1013
Adding variable timeouts for clients by @mskarlin in https://github.com/Future-House/paper-qa/pull/1015

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.24.0...v5.25.0

- Python
Published by mskarlin 11 months ago

What's Changed

Exposing environment on-reset hook for Docs preparation by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1003
Removed reset_log_levels fixture by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1004
Lowering OpenAI base client log verbosity during CI by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1007
Added convenience method DocDetails.make_filename by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1006
Fixed Context not always requiring a call-arg type ignore by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1009
Fixed DocDetails.pages having leading/trailing whitespace by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1008

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.23.0...v5.24.0

- Python
Published by jamesbraza 11 months ago

What's Changed

Rolling out markdownlint-cli to lint Markdown by @jamesbraza in https://github.com/Future-House/paper-qa/pull/979
Modernized CI by @jamesbraza in https://github.com/Future-House/paper-qa/pull/982
Allow extras to be kept in user output by @mskarlin in https://github.com/Future-House/paper-qa/pull/983
Assertions that chunked Text.name have correct page ranges by @jamesbraza in https://github.com/Future-House/paper-qa/pull/985
Refactor to expose PDF parsing settings by @jamesbraza in https://github.com/Future-House/paper-qa/pull/984
Removed dead Docs.index_path and generalized aadd types by @jamesbraza in https://github.com/Future-House/paper-qa/pull/987
Fixing missing bibtex_source, and created BibTeXSource enum by @jamesbraza in https://github.com/Future-House/paper-qa/pull/989
Implemented Text.__eq__ by @jamesbraza in https://github.com/Future-House/paper-qa/pull/988
Change contexts to use ids rather than text by @mskarlin in https://github.com/Future-House/paper-qa/pull/990
Fixing crash on possessive query by @jamesbraza in https://github.com/Future-House/paper-qa/pull/992
Moved debug config to use Claude 3 Haiku by @jamesbraza in https://github.com/Future-House/paper-qa/pull/991
Centralized codespell config and refreshed tooling/lock file versions by @jamesbraza in https://github.com/Future-House/paper-qa/pull/996
Documenting why we drop embeddings by @jamesbraza in https://github.com/Future-House/paper-qa/pull/995
Began deprecation cycle of exclude_text_filter by @jamesbraza in https://github.com/Future-House/paper-qa/pull/994
Supporting bytes in stored documents by @jamesbraza in https://github.com/Future-House/paper-qa/pull/997
Specifying default= in AnswerSettings.answer_length by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1000
Denying empty text going to citation_prompt by @jamesbraza in https://github.com/Future-House/paper-qa/pull/998
Supporting more kwargs in ParsingSettings.parse_pdf by @jamesbraza in https://github.com/Future-House/paper-qa/pull/999
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/1001
Removed extraneous mention of 'relevance scores' from QA prompt template by @jamesbraza in https://github.com/Future-House/paper-qa/pull/1002

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.22.0...v5.23.0

- Python
Published by whitead 11 months ago

What's Changed

Exposing IndexSettings.files_filter for programmatic use by @jamesbraza in https://github.com/Future-House/paper-qa/pull/960
Fixing flaky test_ensure_robust_to_timeouts by lowering timeout by 10X by @jamesbraza in https://github.com/Future-House/paper-qa/pull/963
Fixing code chunking working with binary files by @jamesbraza in https://github.com/Future-House/paper-qa/pull/961
Restoring typeguard functionality by @jamesbraza in https://github.com/Future-House/paper-qa/pull/962
Removing dead print_callback and empty_callback by @jamesbraza in https://github.com/Future-House/paper-qa/pull/964
Fixed chunk_code_text's UnboundLocalError crash on empty code file by @jamesbraza in https://github.com/Future-House/paper-qa/pull/965
Added missing PyPI classifiers by @jamesbraza in https://github.com/Future-House/paper-qa/pull/967
chore(deps): update astral-sh/setup-uv action to v6 by @renovate in https://github.com/Future-House/paper-qa/pull/968
chore(deps): update all non-major dependencies by @renovate in https://github.com/Future-House/paper-qa/pull/969
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/970
add client response errors to our catching stack by @mskarlin in https://github.com/Future-House/paper-qa/pull/972
Making use of new Environment.get_id by @jamesbraza in https://github.com/Future-House/paper-qa/pull/973
Fix pdf parsing bug by @markenki in https://github.com/Future-House/paper-qa/pull/938
Fixed README typo from answer.k to answer.evidence_k by @jamesbraza in https://github.com/Future-House/paper-qa/pull/974
Fixed flaky test test_chain_completion via resolving Cannot add callback by @jamesbraza in https://github.com/Future-House/paper-qa/pull/975
Allow for non-mutated user specified doc-ids by @mskarlin in https://github.com/Future-House/paper-qa/pull/977
Remove threaded pdf parsing by @mskarlin in https://github.com/Future-House/paper-qa/pull/978
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/980

New Contributors

@markenki made their first contribution in https://github.com/Future-House/paper-qa/pull/938

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.21.0...v5.22.0

- Python
Published by whitead 11 months ago

What's Changed

Pulling in Pydantic 2.11, latest tooling, doctests by @jamesbraza in https://github.com/Future-House/paper-qa/pull/920
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/914
Removed LFRQA prompts by @jamesbraza in https://github.com/Future-House/paper-qa/pull/923
Integrating typos tool by @jamesbraza in https://github.com/Future-House/paper-qa/pull/922
Resolved a few deprecation warnings by @jamesbraza in https://github.com/Future-House/paper-qa/pull/926
Fixed README typo on basename by @jamesbraza in https://github.com/Future-House/paper-qa/pull/927
Began deprecation of non-async methods in Docs by @jamesbraza in https://github.com/Future-House/paper-qa/pull/925
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/930
Gave instructions to correct citation on answer by @maykcaldas in https://github.com/Future-House/paper-qa/pull/929
Pulled in latest fhaviary for tool schemae changes by @jamesbraza in https://github.com/Future-House/paper-qa/pull/933
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/934
Updated repo badges by @maykcaldas in https://github.com/Future-House/paper-qa/pull/935
Removed Gemini special case in Settings.adjust_tools_for_agent_llm by @jamesbraza in https://github.com/Future-House/paper-qa/pull/936
Expanded test_chain_completion to check IDs and text by @jamesbraza in https://github.com/Future-House/paper-qa/pull/944
Pulled in latest litellm and fhlmi by @jamesbraza in https://github.com/Future-House/paper-qa/pull/945
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/943
Moved Renovate config validation to CI by @jamesbraza in https://github.com/Future-House/paper-qa/pull/931
Supporting Python 3.13 by @jamesbraza in https://github.com/Future-House/paper-qa/pull/946
Add ipykernel as dev dependency by @tobiasdiez in https://github.com/Future-House/paper-qa/pull/947
Usable "getting started" docs in README, both interpreter and Jupyter by @jamesbraza in https://github.com/Future-House/paper-qa/pull/953
Add error handling for index file loading in SearchIndex by @tobiasdiez in https://github.com/Future-House/paper-qa/pull/948

New Contributors

@tobiasdiez made their first contribution in https://github.com/Future-House/paper-qa/pull/947

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.20.0...v5.21.0

- Python
Published by whitead about 1 year ago

What's Changed

Pulled in latest tantivy for Document.from_dict typing fix by @jamesbraza in https://github.com/Future-House/paper-qa/pull/916
Catch retry errors, i.e. when a metadata service fails by @mskarlin in https://github.com/Future-House/paper-qa/pull/918

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.19.0...v5.20.0

- Python
Published by mskarlin about 1 year ago

What's Changed

Only show the top contexts to the agent for the specific question by @mskarlin in https://github.com/Future-House/paper-qa/pull/912

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.18.0...v5.19.0

- Python
Published by mskarlin about 1 year ago

What's Changed

Added tutorial showing how to configure paperqa Settings by @maykcaldas in https://github.com/Future-House/paper-qa/pull/893
Add reasoning from LLMResult to PQASession by @maykcaldas in https://github.com/Future-House/paper-qa/pull/896
Added embeddings to claude and gemine examples in the readme by @maykcaldas in https://github.com/Future-House/paper-qa/pull/895
Deferred PQA_HOME evaluation until Settings construction by @jamesbraza in https://github.com/Future-House/paper-qa/pull/894
Updated tooling versions and configs by @jamesbraza in https://github.com/Future-House/paper-qa/pull/898
Added discussion to tutorial showing a dry setup for anthropic by @maykcaldas in https://github.com/Future-House/paper-qa/pull/901
Lfrqa tutorial adjustments by @JoaquinPolonuer in https://github.com/Future-House/paper-qa/pull/897
Mentioned dev extra in CONTRIBUTING.md by @jamesbraza in https://github.com/Future-House/paper-qa/pull/903
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/905
Implemented PaperQAEnvironment.from_task by @jamesbraza in https://github.com/Future-House/paper-qa/pull/907
Support for answer iterations in the gen_answer flow by @mskarlin in https://github.com/Future-House/paper-qa/pull/911

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.17.0...v5.18.0

- Python
Published by mskarlin about 1 year ago

paper-qa - v5.17.0

New parsing support for claude3.7 model's summary JSONs.

What's Changed

Support to parse nested quotes in JSONs during the summary step by @mskarlin in https://github.com/Future-House/paper-qa/pull/892

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.16.1...v5.17.0

- Python
Published by mskarlin over 1 year ago

What's Changed

Little fix in import at LFRQA tutorial by @JoaquinPolonuer in https://github.com/Future-House/paper-qa/pull/887
Fixed problematic date parsing by @whitead in https://github.com/Future-House/paper-qa/pull/888

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.16.0...v5.16.1

- Python
Published by whitead over 1 year ago

What's Changed

Add openreview helper to fetch papers from conferences by @eamag in https://github.com/Future-House/paper-qa/pull/879
Update clinical trials setting to use proper tool name by @mskarlin in https://github.com/Future-House/paper-qa/pull/886

New Contributors

@eamag made their first contribution in https://github.com/Future-House/paper-qa/pull/879

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.15.0...v5.16.0

- Python
Published by mskarlin over 1 year ago

What's Changed

Using API key and VCR constants defined in lmi by @jamesbraza in https://github.com/Future-House/paper-qa/pull/880
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/882
Supporting .md in indexing by @jamesbraza in https://github.com/Future-House/paper-qa/pull/881
Many minor updates to README by @jamesbraza in https://github.com/Future-House/paper-qa/pull/883

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.14.0...v5.15.0

- Python
Published by jamesbraza over 1 year ago

What's Changed

Propagates llmclient changes to pqa by @maykcaldas in https://github.com/Future-House/paper-qa/pull/839

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.13.0...v5.14.0

- Python
Published by maykcaldas over 1 year ago

What's Changed

Specific rag-qa-arena changes by @JoaquinPolonuer in https://github.com/Future-House/paper-qa/pull/853
Pin fh-llm-client by @maykcaldas in https://github.com/Future-House/paper-qa/pull/864
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/865
Corrected paper title in tutorial by @JoaquinPolonuer in https://github.com/Future-House/paper-qa/pull/867
Changes to llmparsejson() to handle issues when LLM does not respond as per instructions by @foreverallama in https://github.com/Future-House/paper-qa/pull/843
Correctly escape backlashes by @JoaquinPolonuer in https://github.com/Future-House/paper-qa/pull/870
Migrated LitQA and LFRQA to aviary by @maykcaldas in https://github.com/Future-House/paper-qa/pull/872
Fix aviary typing by @maykcaldas in https://github.com/Future-House/paper-qa/pull/874
Add support and instructions for gemini by @JoaquinPolonuer in https://github.com/Future-House/paper-qa/pull/871
chore(deps): update all non-major dependencies by @renovate in https://github.com/Future-House/paper-qa/pull/876
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/877
Fixed flaky test_answer_rename via flaky decoration by @jamesbraza in https://github.com/Future-House/paper-qa/pull/875
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/878

New Contributors

@foreverallama made their first contribution in https://github.com/Future-House/paper-qa/pull/843

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.12.0...v5.13.0

- Python
Published by jamesbraza over 1 year ago

What's Changed

Allow agent_query to Use an Existing Search Index Without Rebuilding by @psl-schaefer in https://github.com/Future-House/paper-qa/pull/847
Support parallel indexing by @JoaquinPolonuer in https://github.com/Future-House/paper-qa/pull/849
Added the getmanifestkwargs function to get more than doi and title… by @JoaquinPolonuer in https://github.com/Future-House/paper-qa/pull/848
Parallel handle lockbusy by @JoaquinPolonuer in https://github.com/Future-House/paper-qa/pull/855
Move doc details line by @JoaquinPolonuer in https://github.com/Future-House/paper-qa/pull/856
added escape_backlashes function with test by @JoaquinPolonuer in https://github.com/Future-House/paper-qa/pull/858

New Contributors

@psl-schaefer made their first contribution in https://github.com/Future-House/paper-qa/pull/847

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.11.1...v5.12.0

- Python
Published by jamesbraza over 1 year ago

What's Changed

Pulled in latest fh-llm-client to resolve TODO on callbacks cast by @jamesbraza in https://github.com/Future-House/paper-qa/pull/827
Automate fetching the current year by @harryvu-futurehouse in https://github.com/Future-House/paper-qa/pull/828
Fixed typo in pip install instructions by @maykcaldas in https://github.com/Future-House/paper-qa/pull/834
Fixing flaky test test_resuming_crashed_index_build by retrying by @jamesbraza in https://github.com/Future-House/paper-qa/pull/837
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/840
Fixed pagination issue in search.py and added corresponding test by @JoaquinPolonuer in https://github.com/Future-House/paper-qa/pull/846
Fixed mutable default issue in is_hydration_needed by @jamesbraza in https://github.com/Future-House/paper-qa/pull/836
Latest tooling and deps by @jamesbraza in https://github.com/Future-House/paper-qa/pull/842

New Contributors

@JoaquinPolonuer made their first contribution in https://github.com/Future-House/paper-qa/pull/846

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.11.0...v5.11.1

- Python
Published by jamesbraza over 1 year ago

What's Changed

Fixed type problems from llmclient by @maykcaldas in https://github.com/Future-House/paper-qa/pull/770
Clinical trials docs and bugfixes by @mskarlin in https://github.com/Future-House/paper-qa/pull/819
Fixing flaky test test_cli_can_build_and_search_index by retrying by @jamesbraza in https://github.com/Future-House/paper-qa/pull/816
Allowing more general types in Settings by @jamesbraza in https://github.com/Future-House/paper-qa/pull/818
Documenting citation style by @jamesbraza in https://github.com/Future-House/paper-qa/pull/817
Updated badges in README by @maykcaldas in https://github.com/Future-House/paper-qa/pull/821
Pulling in latest ldp for bulk_evaluate_consensus by @jamesbraza in https://github.com/Future-House/paper-qa/pull/826
Updated CITATION.cff to include more info by @jamesbraza in https://github.com/Future-House/paper-qa/pull/824
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/825

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.10.2...v5.11.0

- Python
Published by jamesbraza over 1 year ago

What's Changed

Ensure fields are lists before combining in DocDetails class by @harryvu-futurehouse in https://github.com/Future-House/paper-qa/pull/801
Pulling in latest fh-llm-client for CommonLLMNames by @jamesbraza in https://github.com/Future-House/paper-qa/pull/810
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/811
Fixing gather_evidence and complete response messages by @jamesbraza in https://github.com/Future-House/paper-qa/pull/812

New Contributors

@harryvu-futurehouse made their first contribution in https://github.com/Future-House/paper-qa/pull/801

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.10.1...v5.10.2

- Python
Published by jamesbraza over 1 year ago

What's Changed

Fixing tool failures crashing runners in failover answer by @jamesbraza in https://github.com/Future-House/paper-qa/pull/808
Fixing evidence counted in gather_evidence's response message by @jamesbraza in https://github.com/Future-House/paper-qa/pull/809

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.10.0...v5.10.1

- Python
Published by jamesbraza over 1 year ago

What's Changed

Expose more contexts as output from gather_evidence tool by @mskarlin in https://github.com/Future-House/paper-qa/pull/793
Settings lookup table and improved Settings descriptions by @jamesbraza in https://github.com/Future-House/paper-qa/pull/795
Fixing incorrect seeding argument due to Pydantic extra="ignore" by @jamesbraza in https://github.com/Future-House/paper-qa/pull/797
Loosened input types to allow more MultipleChoiceQuestion by @jamesbraza in https://github.com/Future-House/paper-qa/pull/798
Added aviary-paper-data as LitQA v2 test split by @jamesbraza in https://github.com/Future-House/paper-qa/pull/800
Added LitQAv2TaskSplit.get_index convenience by @jamesbraza in https://github.com/Future-House/paper-qa/pull/802
Refactor to remove QueryRequest entity by @jamesbraza in https://github.com/Future-House/paper-qa/pull/799
Latest tooling by @jamesbraza in https://github.com/Future-House/paper-qa/pull/804
chore(deps): update astral-sh/setup-uv action to v5 by @renovate in https://github.com/Future-House/paper-qa/pull/806
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/807

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.9.2...v5.10.0

- Python
Published by jamesbraza over 1 year ago

paper-qa - v5.9.2

Note to self: run unit tests (and not just mypy) in downstream repos before cutting the release.

What's Changed

Fixing not using set_llm_session_ids from fh-llm-client by @jamesbraza in https://github.com/Future-House/paper-qa/pull/792

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.9.1...v5.9.2

- Python
Published by jamesbraza over 1 year ago

What's Changed

Pinning min version of fh-llm-client by @jamesbraza in https://github.com/Future-House/paper-qa/pull/790
Fixed Record import from Qdrant not being in TYPE_CHECKING block by @jamesbraza in https://github.com/Future-House/paper-qa/pull/791

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.9.0...v5.9.1

- Python
Published by jamesbraza over 1 year ago

What's Changed

feat: Qdrant support by @Anush008 in https://github.com/Future-House/paper-qa/pull/730
Made it possible to get answers from litqa evaluations by @whitead in https://github.com/Future-House/paper-qa/pull/760
Added answer an ideal to gradeable environments by @whitead in https://github.com/Future-House/paper-qa/pull/762
Pinned lower bound on aiohttp for aiohttp.ClientConnectionResetError by @jamesbraza in https://github.com/Future-House/paper-qa/pull/763
Added llmclient dependency by @maykcaldas in https://github.com/Future-House/paper-qa/pull/757
Propagating citation count in flaky test_pdf_reader_match_doc_details by @jamesbraza in https://github.com/Future-House/paper-qa/pull/766
Renovate lockFileMaintenance respecting schedule, 2-week stability period, no openai pinning by @jamesbraza in https://github.com/Future-House/paper-qa/pull/767
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/765
Added test split's source DOIs and question IDs by @jamesbraza in https://github.com/Future-House/paper-qa/pull/771
Consolidated LDP imports into ldp_shims module by @jamesbraza in https://github.com/Future-House/paper-qa/pull/772
Missing None failovers in LDP shims by @jamesbraza in https://github.com/Future-House/paper-qa/pull/774
Dropping refurb in favor of its ruff port by @jamesbraza in https://github.com/Future-House/paper-qa/pull/773
Converting add_texts_and_embeddings to async by @ThomasRochefortB in https://github.com/Future-House/paper-qa/pull/778
Add clinical trials search tool by @mskarlin in https://github.com/Future-House/paper-qa/pull/777
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/769
Replace raise_for_status return None with Mock() in clinical trials test by @mskarlin in https://github.com/Future-House/paper-qa/pull/785
Docs around embeddings and agentic usage by @jamesbraza in https://github.com/Future-House/paper-qa/pull/780
Moved to MultipleChoiceQuestion/MultipleChoiceEvaluation from aviary by @jamesbraza in https://github.com/Future-House/paper-qa/pull/768
Feat/qdrant docs reconstruct by @ThomasRochefortB in https://github.com/Future-House/paper-qa/pull/776
Removed dead test cassettes by @jamesbraza in https://github.com/Future-House/paper-qa/pull/788

New Contributors

@Anush008 made their first contribution in https://github.com/Future-House/paper-qa/pull/730
@ThomasRochefortB made their first contribution in https://github.com/Future-House/paper-qa/pull/778

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.8.0...v5.9.0

- Python
Published by jamesbraza over 1 year ago

paper-qa - v5.6.1

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.6.0...v5.6.1

- Python
Published by sidnarayanan over 1 year ago

What's Changed

Update all non-major dependencies by @renovate in https://github.com/Future-House/paper-qa/pull/745
Created dev extra for convenience by @jamesbraza in https://github.com/Future-House/paper-qa/pull/750
Update all non-major dependencies by @renovate in https://github.com/Future-House/paper-qa/pull/754
Populated LICENSE by @jamesbraza in https://github.com/Future-House/paper-qa/pull/756
Add partitioning func capabilities to allow doc-types-based embedding ranking by @mskarlin in https://github.com/Future-House/paper-qa/pull/752
Exposed seeding of LitQA2 read and shuffling by @jamesbraza in https://github.com/Future-House/paper-qa/pull/758

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.7.0...v5.8.0

- Python
Published by mskarlin over 1 year ago

What's Changed

Moved README to use session over answer by @jamesbraza in https://github.com/Future-House/paper-qa/pull/741
Moved Docs.aadd to support str | os.PathLike by @jamesbraza in https://github.com/Future-House/paper-qa/pull/742
Cleared up 'Adding Documents Manually' docs by @jamesbraza in https://github.com/Future-House/paper-qa/pull/740
Support env states with custom status functions by @mskarlin in https://github.com/Future-House/paper-qa/pull/743
Update astral-sh/setup-uv action to v4 by @renovate in https://github.com/Future-House/paper-qa/pull/746
Moved JSON summary prompt to mention score is an integer by @jamesbraza in https://github.com/Future-House/paper-qa/pull/748

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.6.0...v5.7.0

- Python
Published by jamesbraza over 1 year ago

paper-qa - v5.5.1

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.5.0...v5.5.1

- Python
Published by sidnarayanan over 1 year ago

Highlights

This release is mainly a bunch of bug fixes:

Pulling in breaks in upstream dependencies (e.g. Pydantic 2.10, aviary 0.10.1)
Makes GradablePaperQAEnvironment's evaluations robust to an empty answer or multiple answers

Due to the introduction of Complete.NO_ANSWER_PHRASE in https://github.com/Future-House/paper-qa/pull/726 it was requested we consider this a minor version bump, as it will impact system performance.

What's Changed

Fixed settings session into EnvironmentState, and suppressing PyMuPDF derived DeprecationWarning by @jamesbraza in https://github.com/Future-House/paper-qa/pull/713
Adding assertion gather_evidence doesn't populate session.answer by @jamesbraza in https://github.com/Future-House/paper-qa/pull/716
Lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/715
Fixes gather_with_concurrency typing by @maykcaldas in https://github.com/Future-House/paper-qa/pull/714
Latest tooling dependencies by @jamesbraza in https://github.com/Future-House/paper-qa/pull/719
Lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/718
Fixed EVAL_PROMPT_TEMPLATE to handle empty string or multiple match answers by @jamesbraza in https://github.com/Future-House/paper-qa/pull/724
Address missing GenerateAnswer in trajectories, no answers after Complete tools, and better history by @mskarlin in https://github.com/Future-House/paper-qa/pull/726
Pulling in latest aviary for concurrency rename by @jamesbraza in https://github.com/Future-House/paper-qa/pull/728
Pulling in latest aviary for dependencies fix, and retrying flaky test_propagate_options more by @jamesbraza in https://github.com/Future-House/paper-qa/pull/729
Pulling in latest ldp for Callback.before_rollout by @jamesbraza in https://github.com/Future-House/paper-qa/pull/734
Documenting why we don't handle evaluation failures in GradablePaperQAEnvironment.step by @jamesbraza in https://github.com/Future-House/paper-qa/pull/738
Created LitQAEvaluation.calculate_accuracy_precision utility by @jamesbraza in https://github.com/Future-House/paper-qa/pull/733
Refreshed test cassettes, fixed flaky test test_search, and fixed test type ignores by @jamesbraza in https://github.com/Future-House/paper-qa/pull/739
Unpins pydantic >2.10.2 requirement, removes TYPE_CHECKING by @nadolskit in https://github.com/Future-House/paper-qa/pull/725
Lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/737
Alternative maybe is text by @loesinghaus in https://github.com/Future-House/paper-qa/pull/717

New Contributors

@maykcaldas made their first contribution in https://github.com/Future-House/paper-qa/pull/714
@loesinghaus made their first contribution in https://github.com/Future-House/paper-qa/pull/717

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.5.0...v5.6.0

- Python
Published by jamesbraza over 1 year ago

paper-qa - v5.5.0

Highlights

In all of v5 before this release, we defined the presence of 1+ answer generations not containing the substring "cannot answer" as the agent loop's end. However, this (suboptimally) leads to the agent loop terminating early on partial answers like "Based on the sources provided, it appears no one has done x." We realized this, and have resolved this issue by:

No longer coupling our done condition with the substring "cannot answer" being not present in 1+ generated answers
No longer implicitly depending on clients mentioning this "cannot answer" sentinel in the input qa prompt

We also fixed several (bad) bugs:

We support parallel tool calling (2+ ToolCalls in one action: ToolRequestMessage). However, our tools (notably gather_evidence) are not actually concurrent-safe. Our tool schemae instructed not to call certain tools in parallel, nonetheless we observed agents specifying gather_evidence to be called in parallel. So now we force our tools to be non-concurrently executed to work around this race condition
When using LitQAEvaluation and the same GradablePaperQAEnvironment 2+ times, we repeatedly added the "unsure" option to the target multiple choice question, degrading performance over time
When using PaperQAEnvironment 2+ times, each reset was not properly wiping the Docs object
The reward distribution of LitQAEvaluation was mixing up "unsure" reward of 0.1 with the "incorrect" reward of -1.0, not properly incentivizing learning

There are a bunch of other minor features, cleanups, and bugfixes here too, see the full list below.

What's Changed

Deprecation cycle for AgentSettings.should_pre_search by @jamesbraza in https://github.com/Future-House/paper-qa/pull/679
Moved agent prompts to prompts.py by @jamesbraza in https://github.com/Future-House/paper-qa/pull/681
Refactor to remove skip_system from LLMModel.run_prompt by @jamesbraza in https://github.com/Future-House/paper-qa/pull/680
Resolving evidence_detailed_citations and Answer deprecations by @jamesbraza in https://github.com/Future-House/paper-qa/pull/682
Fixed agent prompt names and contents after #681 mess up by @jamesbraza in https://github.com/Future-House/paper-qa/pull/683
Removed tool_names validation for gen_answer being present by @jamesbraza in https://github.com/Future-House/paper-qa/pull/685
Fixing test_evaluation logic bugs by @jamesbraza in https://github.com/Future-House/paper-qa/pull/686
Removed GenerateAnswer.FAILED_TO_ANSWER as its unnecessary by @jamesbraza in https://github.com/Future-House/paper-qa/pull/691
Allowing serialized Settings in get_settings by @jamesbraza in https://github.com/Future-House/paper-qa/pull/688
Fixed LDP runner's TRUNCATED not calling gen_answer, and documented AgentStatus by @jamesbraza in https://github.com/Future-House/paper-qa/pull/690
Removed gen_answer's dead argument question by @jamesbraza in https://github.com/Future-House/paper-qa/pull/689
Making sure we copy distractors by @sidnarayanan in https://github.com/Future-House/paper-qa/pull/694
Created complete tool to allow unsure answers by @jamesbraza in https://github.com/Future-House/paper-qa/pull/684
Added missing test_from_question cassette by @jamesbraza in https://github.com/Future-House/paper-qa/pull/696
Moved fake agent to LLM propose complete tool by @jamesbraza in https://github.com/Future-House/paper-qa/pull/695
Default to ordered tool calls, w env variable control by @mskarlin in https://github.com/Future-House/paper-qa/pull/697
Lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/699
Refactored TestGradablePaperQAEnvironment for DRY code by @jamesbraza in https://github.com/Future-House/paper-qa/pull/702
Fixing PaperQAEnvironment.reset respecting mmr_lambda and text_hashes by @jamesbraza in https://github.com/Future-House/paper-qa/pull/703
Removed "cannot answer" literals and added reset tool by @jamesbraza in https://github.com/Future-House/paper-qa/pull/698
Update all non-major dependencies by @renovate in https://github.com/Future-House/paper-qa/pull/705
Fixing LitQAEvaluation bugs: incorrect reward indices, not using LLM's native knowledge by @jamesbraza in https://github.com/Future-House/paper-qa/pull/708
Adding filters to paper-qa Docs by @whitead in https://github.com/Future-House/paper-qa/pull/707
Fixed mutably defaulted NumpyVectorStore.texts by @jamesbraza in https://github.com/Future-House/paper-qa/pull/711

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.4.0...v5.5.0

- Python
Published by jamesbraza over 1 year ago

paper-qa - Hotfix to included `ordered=True` in tool exec calls

Prevents parallel tool calls from clobbering the env. state.

- Python
Published by mskarlin over 1 year ago

paper-qa - v5.3.3

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.3.2...v5.3.3

- Python
Published by sidnarayanan over 1 year ago

paper-qa - v5.4.0

What's Changed

Renamed to PQASession type by @whitead in https://github.com/Future-House/paper-qa/pull/653
Lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/657
Ability to zero-shot gen_answer by @jamesbraza in https://github.com/Future-House/paper-qa/pull/658
Lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/659
Moving to uv dependency groups by @jamesbraza in https://github.com/Future-House/paper-qa/pull/660
Lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/664
Convert citation to formatted_citation usage where necessary by @mskarlin in https://github.com/Future-House/paper-qa/pull/666
Catch edge case where externalIds field is None by @mskarlin in https://github.com/Future-House/paper-qa/pull/668
Made o1 temperature issue a warning, instead of valueerror by @whitead in https://github.com/Future-House/paper-qa/pull/669
Added train and eval splits' questions and DOIs by @jamesbraza in https://github.com/Future-House/paper-qa/pull/662
fake agent allowing timeouts or exceptions, by @jamesbraza in https://github.com/Future-House/paper-qa/pull/672
Optional AnswerSetting.max_answer_attempts to allow a new unsure branch by @jamesbraza in https://github.com/Future-House/paper-qa/pull/673
Made it so you do not die on invalid tool by @whitead in https://github.com/Future-House/paper-qa/pull/670
Allowing latest pydantic-settings and regenerated cassettes by @jamesbraza in https://github.com/Future-House/paper-qa/pull/674
Empty tool calls leading to done condition by @jamesbraza in https://github.com/Future-House/paper-qa/pull/671
Changed it to be debug for source quality by @whitead in https://github.com/Future-House/paper-qa/pull/675

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.3.2...v5.4.0

- Python
Published by jamesbraza over 1 year ago

paper-qa - v5.3.2

What's Changed

Printing the text in a failed llm_parse_json by @jamesbraza in https://github.com/Future-House/paper-qa/pull/629
Change S2 client logic to use arxiv doi if it's defined by @mskarlin in https://github.com/Future-House/paper-qa/pull/632
Increased retry count for ClientConnectorDNSError errors by @jamesbraza in https://github.com/Future-House/paper-qa/pull/639
Make string similarity case insensitive by default by @mskarlin in https://github.com/Future-House/paper-qa/pull/640
Pulling in latest fhaviary, mypy, ruff by @jamesbraza in https://github.com/Future-House/paper-qa/pull/647
Add an after model validator ensuring temp=1 for o1 models by @dakoner in https://github.com/Future-House/paper-qa/pull/649
Fixing crash due to None author by @jamesbraza in https://github.com/Future-House/paper-qa/pull/650
Fixing flaky test test_minimal_fields_filtering by @jamesbraza in https://github.com/Future-House/paper-qa/pull/651
Fixing flaky tests test_code and test_minimal_fields_filtering by @jamesbraza in https://github.com/Future-House/paper-qa/pull/652
Lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/648

New Contributors

@dakoner made their first contribution in https://github.com/Future-House/paper-qa/pull/649

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.3.1...v5.3.2

- Python
Published by jamesbraza over 1 year ago

paper-qa - v5.3.1

What's Changed

Exposed LDPRolloutCallback and on_agent_action_callback for fake agent by @jamesbraza in https://github.com/Future-House/paper-qa/pull/612
Fixed NumpyVectorStore.__eq__'s NotImplemented case by @jamesbraza in https://github.com/Future-House/paper-qa/pull/613
Implemented __deepcopy__ on all Environments by @jamesbraza in https://github.com/Future-House/paper-qa/pull/614
Made embedding default by @whitead in https://github.com/Future-House/paper-qa/pull/615
Lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/617
Pulled in latest PyMuPDF for set_messages by @jamesbraza in https://github.com/Future-House/paper-qa/pull/618
Fixed crash due to DOI being a list by @jamesbraza in https://github.com/Future-House/paper-qa/pull/619
Added configuration to adjust how contexts are displayed by @whitead in https://github.com/Future-House/paper-qa/pull/620
Fixing CI by regenerating test_pdf_reader_match_doc_details cassette by @jamesbraza in https://github.com/Future-House/paper-qa/pull/625
Retrying flaky test test_propagate_options by @jamesbraza in https://github.com/Future-House/paper-qa/pull/626
Regression protection in embedding_model_factory by @jamesbraza in https://github.com/Future-House/paper-qa/pull/622
Added writer.wait_merging_threads call by @jamesbraza in https://github.com/Future-House/paper-qa/pull/628
Caching opened tantivy.Indexes in the package by @jamesbraza in https://github.com/Future-House/paper-qa/pull/627

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.3.0...v5.3.1

- Python
Published by whitead over 1 year ago

paper-qa - v5.3.0

What's Changed

Add callback support in settings and tools by @nadolskit in https://github.com/Future-House/paper-qa/pull/590
Moved validate_sources to include all sources not found by @jamesbraza in https://github.com/Future-House/paper-qa/pull/595
Cleaning up citations by @jamesbraza in https://github.com/Future-House/paper-qa/pull/598
Validating sources with case insensitive DOI matching by @jamesbraza in https://github.com/Future-House/paper-qa/pull/600
Added sentence transformers embedding model by @whitead in https://github.com/Future-House/paper-qa/pull/604
Cleaned and clarified deferred embeddings code by @jamesbraza in https://github.com/Future-House/paper-qa/pull/597
Fixed NumpyVectorStore.clear from not clearing text_hashes by @jamesbraza in https://github.com/Future-House/paper-qa/pull/608
Moved Pydantic model_config to top of each class by @jamesbraza in https://github.com/Future-House/paper-qa/pull/607
Testing we can use ~ as paper_directory by @jamesbraza in https://github.com/Future-House/paper-qa/pull/610
Increased testing of NumpyVectorStore and defer_embeddings by @jamesbraza in https://github.com/Future-House/paper-qa/pull/606
Expose env class to run_agent functions by @mskarlin in https://github.com/Future-House/paper-qa/pull/611

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.2.1...v5.3.0

- Python
Published by whitead over 1 year ago

paper-qa - v5.2.1

What's Changed

Fixing Settings propagation and always configuring LiteLLM retrying by @jamesbraza in https://github.com/Future-House/paper-qa/pull/575
Fixing the ability to resume index builds by @jamesbraza in https://github.com/Future-House/paper-qa/pull/577
Fixed GLOBAL_RATE_LIMITER_TIMEOUT env var typo by @jamesbraza in https://github.com/Future-House/paper-qa/pull/578
Lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/583
Unsilencing manifest read failure when no CSV header is present by @jamesbraza in https://github.com/Future-House/paper-qa/pull/587
Added typeguard to confirm type hints by @jamesbraza in https://github.com/Future-House/paper-qa/pull/585
Renovate once/month, removing stale LiteLLM disables by @jamesbraza in https://github.com/Future-House/paper-qa/pull/589
Fixed a few minor SearchIndex bugs and documented SearchIndex by @jamesbraza in https://github.com/Future-House/paper-qa/pull/588
Confirming LitQA sources are in a manifest/index by @jamesbraza in https://github.com/Future-House/paper-qa/pull/579
Limiting parsed page size to 1.28 million chars by @jamesbraza in https://github.com/Future-House/paper-qa/pull/592
Stripping DOI URL prefix for sources by @jamesbraza in https://github.com/Future-House/paper-qa/pull/593
Fix sequential client query clobbering by @mskarlin in https://github.com/Future-House/paper-qa/pull/594

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.2.0...v5.2.1

- Python
Published by jamesbraza over 1 year ago

paper-qa - v5.2.0: OpenAlex

Highlights

Added a new metadata provider OpenAlex for scholarly work, researchers, institutions, journals, and research topics.

Responses can include open access information and raw pdf locations.
Doesn't require authentication, but does prioritize requests with an email in the mailto URL parameter, exposed as an environment variable OPENALEX_MAILTO

Implemented an opt-in bypass around the litellm.Router for LLM completions (see https://github.com/Future-House/paper-qa/pull/563)

What's Changed

Fixed pickle-ability of LiteLLMModel by @jamesbraza in https://github.com/Future-House/paper-qa/pull/560
Refactoring LiteLLMModel before removing Router by @jamesbraza in https://github.com/Future-House/paper-qa/pull/561
Adds openalex client as a default client by @nadolskit in https://github.com/Future-House/paper-qa/pull/555
Moving to setup-uv and hynek/build-and-inspect-python-package in CI by @jamesbraza in https://github.com/Future-House/paper-qa/pull/564
Ability to bypass usage of litellm.Router by @jamesbraza in https://github.com/Future-House/paper-qa/pull/563
Propagating hynek/build-and-inspect-python-package's output location to pypa/gh-action-pypi-publish by @jamesbraza in https://github.com/Future-House/paper-qa/pull/565
Downloading Package artifact for pypa/gh-action-pypi-publish by @jamesbraza in https://github.com/Future-House/paper-qa/pull/566

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.1.1...v5.2.0

- Python
Published by jamesbraza over 1 year ago

paper-qa - v5.1.1

What's Changed

Lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/545
Validating for broken index by @jamesbraza in https://github.com/Future-House/paper-qa/pull/544
Added example how to use ollama hosted models by @grg-ffb in https://github.com/Future-House/paper-qa/pull/536
Making parsing resistant to failed inference of citations by @whitead in https://github.com/Future-House/paper-qa/pull/551
Exposed log verbosity configuration function by @jamesbraza in https://github.com/Future-House/paper-qa/pull/552
Cleaned up log verbosity code by @jamesbraza in https://github.com/Future-House/paper-qa/pull/554

New Contributors

@grg-ffb made their first contribution in https://github.com/Future-House/paper-qa/pull/536

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.1.0...v5.1.1

- Python
Published by jamesbraza over 1 year ago

paper-qa - v5.1.0: rate limits, refactored settings

Highlights

In-housed rate limits management

Centers on a moving window algorithm with either a Redis or in-memory state
Supports dynamically defined rates for different models or providers.
New bundled configurations for different OpenAI rate limit tiers
Accomplished using new third party dependencies coredis and limits

Refactored Settings to allow for increased flexibility

Indexing
- Indexes can use relative paths, enabling sharing across machines
- Paper search now no longer rebuilds the index every invocation
- Index parameter now are grouped in IndexSettings
  - This release begins a deprecation cycle for the original hyperparameters
- Index builds now have a rich.Progress bar
Parsing
- Chunking and embedding can now be deferred to inference time
Agents
- Agents now have a max_timesteps parameter to upper-bound trajectory length
- Default agent is now a simple tool calling agent (ToolSelector), instead of a deterministic sequence of tool calls ("fake" agent)

Several bug fixes centered on retry-able errors:

Flaky Semantic Scholar and Crossref SSL errors and connection reset errors
LLM completions and text embeddings

What's Changed

Cleaning up #489's implementation by @jamesbraza in https://github.com/Future-House/paper-qa/pull/503
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/504
chore(deps): lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/506
chore(deps): update all non-major dependencies by @renovate in https://github.com/Future-House/paper-qa/pull/505
Filtering two more DeprecationWarnings by @jamesbraza in https://github.com/Future-House/paper-qa/pull/509
Refactor to create settings.agent.index grouping by @jamesbraza in https://github.com/Future-House/paper-qa/pull/510
Removed extra save_index calls, and added missing changed by @jamesbraza in https://github.com/Future-House/paper-qa/pull/513
Not rebuilding SearchIndex every paper_search by @jamesbraza in https://github.com/Future-House/paper-qa/pull/512
Updated citation to arxiv preprint by @whitead in https://github.com/Future-House/paper-qa/pull/514
Aviary agent max_timesteps and fixed test_gather_evidence_rejects_empty_docs by @jamesbraza in https://github.com/Future-House/paper-qa/pull/515
Moved reset_log_levels to usefixtures by @jamesbraza in https://github.com/Future-House/paper-qa/pull/517
Decomposing Answer.could_not_answer by @jamesbraza in https://github.com/Future-House/paper-qa/pull/516
Fixing IndexSettings.use_absolute_paper_directory leading to relative index file paths by @jamesbraza in https://github.com/Future-House/paper-qa/pull/518
Moving run_ldp_agent to center on RolloutManager by @jamesbraza in https://github.com/Future-House/paper-qa/pull/519
Retrying on known Semantic Scholar flaky SSL error in get_s2_doc_details_from_doi by @jamesbraza in https://github.com/Future-House/paper-qa/pull/522
Converted PyMuPDF message to warning logs by @jamesbraza in https://github.com/Future-House/paper-qa/pull/523
rich.Progress bar for monitoring index builds by @jamesbraza in https://github.com/Future-House/paper-qa/pull/521
Better descriptions and log messages by @jamesbraza in https://github.com/Future-House/paper-qa/pull/524
Made it possible to skip chunking by @whitead in https://github.com/Future-House/paper-qa/pull/526
Retrying on aiohttp.ClientConnectionResetError by @jamesbraza in https://github.com/Future-House/paper-qa/pull/529
Add rate limits for LLMs and Embedding Models by @mskarlin in https://github.com/Future-House/paper-qa/pull/520
Disallowing confusing None from IndexSettings.index_directory, and IndexSettings.get_named_index_directory by @jamesbraza in https://github.com/Future-House/paper-qa/pull/531
Add router_kwargs in separate control flow step by @mskarlin in https://github.com/Future-House/paper-qa/pull/532
Propagating AgentSettings.agent_type default for synchrony by @jamesbraza in https://github.com/Future-House/paper-qa/pull/533
Adding retrying of aembedding if it fails by @jamesbraza in https://github.com/Future-House/paper-qa/pull/535
Add limits+coredis to mypy by @mskarlin in https://github.com/Future-House/paper-qa/pull/537
Lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/534
Controlling for pymupdf version in test_pdf_reader_match_doc_details VCR by @jamesbraza in https://github.com/Future-House/paper-qa/pull/538
Lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/539
Fixed yet another api.semanticscholar.org:443 ssl:default error via retrying by @jamesbraza in https://github.com/Future-House/paper-qa/pull/540

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.0.10...v5.1.0

- Python
Published by jamesbraza over 1 year ago

paper-qa - v5.0.10

What's Changed

Discovered Renovate :automergeMinor and preventing openai version bumps by @jamesbraza in https://github.com/Future-House/paper-qa/pull/493
Fixing LitQATaskDataset deserialization from config by @jamesbraza in https://github.com/Future-House/paper-qa/pull/494
chore(deps): update all non-major dependencies by @renovate in https://github.com/Future-House/paper-qa/pull/498
Broken reader ut by @nadolskit in https://github.com/Future-House/paper-qa/pull/497
Fixing LitQATaskDatasetcompute_trajectory_metrics crash with bad status extraction by @jamesbraza in https://github.com/Future-House/paper-qa/pull/500
For autogenerated Router kwargs, specifying timeout of 60-sec by @jamesbraza in https://github.com/Future-House/paper-qa/pull/501

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.0.9...v5.0.10

- Python
Published by jamesbraza over 1 year ago

paper-qa - v5.0.9

What's Changed

Fixing tests/tests/cassettes issue by using absolute path by @jamesbraza in https://github.com/Future-House/paper-qa/pull/482
Retrying on known Crossref flaky SSL error in doi_to_bibtex by @jamesbraza in https://github.com/Future-House/paper-qa/pull/479
Cleaning up and testing get_directory_index by @jamesbraza in https://github.com/Future-House/paper-qa/pull/483
Modernizing Renovate config by @jamesbraza in https://github.com/Future-House/paper-qa/pull/487
Allowing parse_text to be given a str path by @jamesbraza in https://github.com/Future-House/paper-qa/pull/491
Refactor to expose agents.RichHandler by @jamesbraza in https://github.com/Future-House/paper-qa/pull/489

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.0.8...v5.0.9

- Python
Published by jamesbraza over 1 year ago

paper-qa - v5.0.8

What's Changed

Documenting and cleaning up manifest file logic by @jamesbraza in https://github.com/Future-House/paper-qa/pull/448
Latest dependencies for pylint 3.3 by @jamesbraza in https://github.com/Future-House/paper-qa/pull/463
Down-pinning openai 1.47 since it breaks CI by @jamesbraza in https://github.com/Future-House/paper-qa/pull/466
Lock file maintenance by @renovate in https://github.com/Future-House/paper-qa/pull/462
chore: add .gitattributes for cassettes file by @devstein in https://github.com/Future-House/paper-qa/pull/468
Documenting Python 3.11+ in README by @jamesbraza in https://github.com/Future-House/paper-qa/pull/467
Fixing flaky test_tool_failure by @jamesbraza in https://github.com/Future-House/paper-qa/pull/465
Documenting manifest CSV pathing a bit more by @jamesbraza in https://github.com/Future-House/paper-qa/pull/469
Handling S2 KeyError crash during indexing by @jamesbraza in https://github.com/Future-House/paper-qa/pull/472
Fixing pymupdf.mupdf.FzErrorFormat crash by recasting as an ImpossibleParsingError by @jamesbraza in https://github.com/Future-House/paper-qa/pull/474
Updating test_tool_failure cassette by @jamesbraza in https://github.com/Future-House/paper-qa/pull/476
Simplifying the indexing of action tokens by @jamesbraza in https://github.com/Future-House/paper-qa/pull/477
Truncating failing test_evaluation via max_rollout_steps by @jamesbraza in https://github.com/Future-House/paper-qa/pull/475

New Contributors

@devstein made their first contribution in https://github.com/Future-House/paper-qa/pull/468

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.0.7...v5.0.8

- Python
Published by jamesbraza over 1 year ago

paper-qa - v5.0.7

What's Changed

Fixing flaky test test_pdf_reader_match_doc_details by @jamesbraza in https://github.com/Future-House/paper-qa/pull/447
Retrying Crossref's aiohttp.ClientConnectorError by @jamesbraza in https://github.com/Future-House/paper-qa/pull/444
Handling AttributeError on structured citation prompt failure by @jamesbraza in https://github.com/Future-House/paper-qa/pull/445

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.0.6...v5.0.7

- Python
Published by jamesbraza over 1 year ago

paper-qa - v5.0.6

What's Changed

Avoiding div0 crash in LitQATaskDataset.compute_trajectory_metrics by @jamesbraza in https://github.com/Future-House/paper-qa/pull/439
Added some documentation and adjusted field names for ease of use in DocDetails by @whitead in https://github.com/Future-House/paper-qa/pull/440

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.0.5...v5.0.6

- Python
Published by whitead over 1 year ago

paper-qa - v5.0.5

What's Changed

build_index with defaults by @jamesbraza in https://github.com/Future-House/paper-qa/pull/430
Less common CROSSREF_XYZ warnings by @jamesbraza in https://github.com/Future-House/paper-qa/pull/431
DRY'd up default indexes default location by @jamesbraza in https://github.com/Future-House/paper-qa/pull/432
Including paper and evidence counts in metrics by @jamesbraza in https://github.com/Future-House/paper-qa/pull/435
Allowing case insensitive "fake" agent type by @jamesbraza in https://github.com/Future-House/paper-qa/pull/437
Many documentation improvements by @jamesbraza in https://github.com/Future-House/paper-qa/pull/438

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.0.4...v5.0.5

- Python
Published by jamesbraza over 1 year ago

paper-qa - v5.0.4

What's Changed

DocMetadataClient can now take instantiated providers and processors by @geemi725 in https://github.com/Future-House/paper-qa/pull/414
Promoting agent factories to Settings by @jamesbraza in https://github.com/Future-House/paper-qa/pull/407
Add stubdatadir fixture to retraction test by @geemi725 in https://github.com/Future-House/paper-qa/pull/420
pytest-recording docs in CONTRIBUTING.md by @jamesbraza in https://github.com/Future-House/paper-qa/pull/410
Fixing test_crossref_journalquality_fields_filtering incorrect cassette set up by @jamesbraza in https://github.com/Future-House/paper-qa/pull/423
Broken title search ut by @nadolskit in https://github.com/Future-House/paper-qa/pull/411
Update pre-commit-ci/lite-action action to v1.0.3 by @renovate in https://github.com/Future-House/paper-qa/pull/422
Pinning min pymupdf version by @jamesbraza in https://github.com/Future-House/paper-qa/pull/424
Preventing Environments from sharing one Docs by @jamesbraza in https://github.com/Future-House/paper-qa/pull/425
Dropped PyCryptodome and build dependencies by @jamesbraza in https://github.com/Future-House/paper-qa/pull/426

New Contributors

@nadolskit made their first contribution in https://github.com/Future-House/paper-qa/pull/411

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.0.3...v5.0.4

- Python
Published by jamesbraza over 1 year ago

paper-qa - v5.0.3

What's Changed

Adding Renovate config and newer dependencies by @jamesbraza in https://github.com/Future-House/paper-qa/pull/398
Fixing mutable BaseModel defaults and removing extra BaseModel by @jamesbraza in https://github.com/Future-House/paper-qa/pull/400
Passing mypy paperqa by @jamesbraza in https://github.com/Future-House/paper-qa/pull/405
Adding CONTRIBUTING.md by @jamesbraza in https://github.com/Future-House/paper-qa/pull/404
Creating LitQAv2TaskDataset for agent training/evaluation by @jamesbraza in https://github.com/Future-House/paper-qa/pull/401

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.0.2...v5.0.3

- Python
Published by jamesbraza over 1 year ago

paper-qa - v5.0.2

What's Changed

Changed email addresses to something less generic by @whitead in https://github.com/Future-House/paper-qa/pull/376
Fix examples in README by @taabishm2 in https://github.com/Future-House/paper-qa/pull/379
Validating LiteLLMModel.config structure by @jamesbraza in https://github.com/Future-House/paper-qa/pull/383
No google auth, better CI names by @jamesbraza in https://github.com/Future-House/paper-qa/pull/384
Fixing Pydantic validation in Python<3.12 by @jamesbraza in https://github.com/Future-House/paper-qa/pull/385
LitQA2 downloading and question creation functionality by @jamesbraza in https://github.com/Future-House/paper-qa/pull/386
Testing MemoryAgent and timeouts on ldp agents by @jamesbraza in https://github.com/Future-House/paper-qa/pull/375
Removed monkeypatch fixture since it's not a dependency by @jamesbraza in https://github.com/Future-House/paper-qa/pull/395
Fixing crash in chunk_text for empty file by @jamesbraza in https://github.com/Future-House/paper-qa/pull/389

New Contributors

@taabishm2 made their first contribution in https://github.com/Future-House/paper-qa/pull/379

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.0.1...v5.0.2

- Python
Published by whitead over 1 year ago

paper-qa - v5.0.1

What's Changed

Removed StrPath in favor of direct type hints by @jamesbraza in https://github.com/Future-House/paper-qa/pull/369
Added tool description update to test by @mskarlin in https://github.com/Future-House/paper-qa/pull/368
Added explanation of different with paper by @whitead in https://github.com/Future-House/paper-qa/pull/371
Updates to retraction status checker by @geemi725 in https://github.com/Future-House/paper-qa/pull/370
Retrying if ToolSelector fails to select a tool by @jamesbraza in https://github.com/Future-House/paper-qa/pull/373
Reset default settings to use high_quality and remove truncation by @mskarlin in https://github.com/Future-House/paper-qa/pull/374

Full Changelog: https://github.com/Future-House/paper-qa/compare/v5.0.0...v5.0.1

- Python
Published by whitead over 1 year ago

paper-qa - V5.0.0

New Features

Automatic population of metadata: PDF metadata is automatically retrieved from a variety of providers, including adding bibtex, citation counts, journal quality assessments, and noting retractions
full-text search: A major difference between our published work and this repo is ability to search over all of scientific literature. We've brought the OSS version closer by adding full-text keyword search via tantivy. Now you can index and search many papers before embdding, making it feasible to ingest many papers.
unified settings management: You can now save/load settings and that makes it easier for us to distribute settings reflecting various tasks with PaperQA2. Examples are writing wikipedia articles, identifying contradictions, and obtaining structured data
CLI: We've made a CLI that uses persistent parsings/indexes and makes it much easier to just ask questions of a folder of PDFs
Litellm: We've adopted litellm as the LLM wrapper of choice. This means we now support many LLM APIs directly with only the model string changing. It also means we have "routers" now that can do fallbacks, api rate limiting, and retries.

Improvements

More modern agent frameworks
Reduction in dependencies
Removed code duplicated by litellm
Many improvements on code style and best practices

Regressions/Deprecation

We've removed the following features to keep our library focused:

doc_match - we do not have enough data to support that this method actually helps for very large corpuses
LangchainVectorStore - We no longer support more complex vector stores via Langchain like FAISS. Instead, we only support Numpy vector stores. We never found the paradigm of very large vector stores to be better than keyword search -> vector search -> LLM reranking and thus removed the code

Detailed Changes:

typo by @oganm in https://github.com/Future-House/paper-qa/pull/303
Updated readme and models by @mskarlin in https://github.com/Future-House/paper-qa/pull/305
Add Client (external API) Module For Enhanced Metadata by @mskarlin in https://github.com/Future-House/paper-qa/pull/306
Agentic workflows, locally indexed search, and CLI by @mskarlin in https://github.com/Future-House/paper-qa/pull/309
Add new unpaywall provider by @mskarlin in https://github.com/Future-House/paper-qa/pull/310
Rollback search fields to list and dynamically compute md5 hash in tests by @mskarlin in https://github.com/Future-House/paper-qa/pull/311
Refactor to breakout config from rest of code by @whitead in https://github.com/Future-House/paper-qa/pull/289
Changed to rely on litellm for computing cost by @whitead in https://github.com/Future-House/paper-qa/pull/321
Fixing LLMModel.axyz_iter type hints by @jamesbraza in https://github.com/Future-House/paper-qa/pull/324
CLI Fixes by @whitead in https://github.com/Future-House/paper-qa/pull/322
blackened code to prevent IDE scrolling by @jamesbraza in https://github.com/Future-House/paper-qa/pull/330
Optimized import paths by @jamesbraza in https://github.com/Future-House/paper-qa/pull/331
Removed pytest-mock plugin by @jamesbraza in https://github.com/Future-House/paper-qa/pull/328
Adding pytest-xdist plugin by @jamesbraza in https://github.com/Future-House/paper-qa/pull/329
Passing mypy by @jamesbraza in https://github.com/Future-House/paper-qa/pull/332
Removing make_chain in favor of run_prompt by @jamesbraza in https://github.com/Future-House/paper-qa/pull/325
Readme updates by @mskarlin in https://github.com/Future-House/paper-qa/pull/323
Adding refurb tool, and lint CI by @jamesbraza in https://github.com/Future-House/paper-qa/pull/333
Fixing arg ordering after #325 by @jamesbraza in https://github.com/Future-House/paper-qa/pull/334
Fixing parse_text after #332 by @jamesbraza in https://github.com/Future-House/paper-qa/pull/335
Fixing union attr error by @jamesbraza in https://github.com/Future-House/paper-qa/pull/338
Check if a journal name starts with the by @geemi725 in https://github.com/Future-House/paper-qa/pull/320
Fixing two more tests by @jamesbraza in https://github.com/Future-House/paper-qa/pull/340
All Ruff ANN autofixes by @jamesbraza in https://github.com/Future-House/paper-qa/pull/341
Adding in .mailmap by @jamesbraza in https://github.com/Future-House/paper-qa/pull/342
Remove cassettes which aren't needed by @mskarlin in https://github.com/Future-House/paper-qa/pull/339
Add configs for contracrow + wikicrow by @mskarlin in https://github.com/Future-House/paper-qa/pull/336
Removed LangchainVectorStore, llms extra, and fixing up README by @jamesbraza in https://github.com/Future-House/paper-qa/pull/343
Dropping requests dependency by @jamesbraza in https://github.com/Future-House/paper-qa/pull/346
Removed html2text requirement by @jamesbraza in https://github.com/Future-House/paper-qa/pull/347
Requiring Python 3.11+ by @jamesbraza in https://github.com/Future-House/paper-qa/pull/348
Did one revision at README by @whitead in https://github.com/Future-House/paper-qa/pull/344
Renaming fitz to pymupdf by @mskarlin in https://github.com/Future-House/paper-qa/pull/350
Better control flow in litellm_get_search_query by @jamesbraza in https://github.com/Future-House/paper-qa/pull/351
Recurse into directories; catch empty documents by @sidnarayanan in https://github.com/Future-House/paper-qa/pull/352
Move configureclilogging such that it's not called twice by @mskarlin in https://github.com/Future-House/paper-qa/pull/353
Cleaning up dependencies by @jamesbraza in https://github.com/Future-House/paper-qa/pull/354
Fixed code in README by @whitead in https://github.com/Future-House/paper-qa/pull/355
Added citation and paper URL by @whitead in https://github.com/Future-House/paper-qa/pull/357
aviary and ldp for agents over langchain by @jamesbraza in https://github.com/Future-House/paper-qa/pull/358
Adds retraction status by @geemi725 in https://github.com/Future-House/paper-qa/pull/314
Adding pylint by @jamesbraza in https://github.com/Future-House/paper-qa/pull/349
Added account for cost info by @whitead in https://github.com/Future-House/paper-qa/pull/360

New Contributors

@oganm made their first contribution in https://github.com/Future-House/paper-qa/pull/303
@geemi725 made their first contribution in https://github.com/Future-House/paper-qa/pull/320
@sidnarayanan made their first contribution in https://github.com/Future-House/paper-qa/pull/352

Full Changelog: https://github.com/Future-House/paper-qa/compare/v4.9.0...vnew

- Python
Published by whitead over 1 year ago

paper-qa - v5.0.0-alpha.1

PRE-RELEASE

What's Changed

typo by @oganm in https://github.com/Future-House/paper-qa/pull/303
Updated readme and models by @mskarlin in https://github.com/Future-House/paper-qa/pull/305
Add Client (external API) Module For Enhanced Metadata by @mskarlin in https://github.com/Future-House/paper-qa/pull/306
Agentic workflows, locally indexed search, and CLI by @mskarlin in https://github.com/Future-House/paper-qa/pull/309

New Contributors

@oganm made their first contribution in https://github.com/Future-House/paper-qa/pull/303

Full Changelog: https://github.com/Future-House/paper-qa/compare/v4.9.0...v5.0.0-alpha.1

- Python
Published by whitead almost 2 years ago

paper-qa - v4.9.0

What's Changed

Latest ruff and codespell by @jamesbraza in https://github.com/whitead/paper-qa/pull/295
Documented Context.context and defaulted LLMResult.date by @jamesbraza in https://github.com/whitead/paper-qa/pull/296
Documenting PromptCollection.pre by @jamesbraza in https://github.com/whitead/paper-qa/pull/298
Fixing pre missing a space by @jamesbraza in https://github.com/whitead/paper-qa/pull/297
Enhanced mypy and Ruff 0.5 by @jamesbraza in https://github.com/whitead/paper-qa/pull/300
Moved to setuptools_scm for versioning from git tag by @jamesbraza in https://github.com/whitead/paper-qa/pull/301

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.8.1...v4.9.0

- Python
Published by jamesbraza almost 2 years ago

paper-qa - v4.8.1

What's Changed

Fixed sonnet json formatting issue by @whitead in https://github.com/whitead/paper-qa/pull/293

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.8.0...v4.8.1

- Python
Published by whitead almost 2 years ago

paper-qa - v4.8.0

What's Changed

Support Anyscale OpenAI models by @mskarlin in https://github.com/whitead/paper-qa/pull/285
Decompose is_openai_model into separate call for Anyscale by @mskarlin in https://github.com/whitead/paper-qa/pull/287
Removed slient 429 by @whitead in https://github.com/whitead/paper-qa/pull/290

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.7.0...v4.8.0

- Python
Published by whitead almost 2 years ago

paper-qa - v4.7.0

What's Changed

Simplify langhcain config by @whitead in https://github.com/whitead/paper-qa/pull/282

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.6.1...v4.7.0

- Python
Published by whitead almost 2 years ago

paper-qa - v4.6.1

What's Changed

Add VoyageAI embeddings by @mskarlin in https://github.com/whitead/paper-qa/pull/276
Support fine tuned Openai model selections by @mskarlin in https://github.com/whitead/paper-qa/pull/277
Fixed summary_json_system_prompt by @jamesbraza in https://github.com/whitead/paper-qa/pull/281
remove intro sentence in citation prompt by @rosepolle in https://github.com/whitead/paper-qa/pull/280

New Contributors

@rosepolle made their first contribution in https://github.com/whitead/paper-qa/pull/280

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.6.0...v4.6.1

- Python
Published by whitead almost 2 years ago

paper-qa - v4.6.0

What's Changed

Removed extra space from select_paper_prompt by @jamesbraza in https://github.com/whitead/paper-qa/pull/275
Configurability of SparseEmbeddingModel from embedding_model_factory by @jamesbraza in https://github.com/whitead/paper-qa/pull/274

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.5.2...v4.6.0

- Python
Published by whitead about 2 years ago

paper-qa - v4.5.2

What's Changed

Cleaning-up formatting on json mode by @whitead in https://github.com/whitead/paper-qa/pull/271
Fixed flaky add_texts test by @whitead in https://github.com/whitead/paper-qa/pull/272

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.5.1...v4.5.2

- Python
Published by whitead about 2 years ago

paper-qa - v4.5.1

What's Changed

dev extra and cleaned up CI by @jamesbraza in https://github.com/whitead/paper-qa/pull/263
CI pip caching by @jamesbraza in https://github.com/whitead/paper-qa/pull/266
More robust JSON parsing by @whitead in https://github.com/whitead/paper-qa/pull/270

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.5.0...v4.5.1

- Python
Published by whitead about 2 years ago

paper-qa - v4.5.0

What's Changed

Delaying of state mutation in Docs.aadd_texts by @jamesbraza in https://github.com/whitead/paper-qa/pull/264

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.4.1...v4.5.0

- Python
Published by whitead about 2 years ago

paper-qa - v4.4.1

What's Changed

Creating Answer.get_unique_docs_from_contexts helper method by @jamesbraza in https://github.com/whitead/paper-qa/pull/261
Added batching to embed documents by @whitead in https://github.com/whitead/paper-qa/pull/262

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.4.0...v4.4.1

- Python
Published by whitead about 2 years ago

paper-qa - v4.4.0

What's Changed

Documenting LLMResult by @jamesbraza in https://github.com/whitead/paper-qa/pull/255
Migrating from setup.py to pyproject.toml by @jamesbraza in https://github.com/whitead/paper-qa/pull/252
Adjust whitespace on detailed citations by @whitead in https://github.com/whitead/paper-qa/pull/257

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.3.0...v4.4.0

- Python
Published by whitead about 2 years ago

paper-qa - v4.3.0

What's Changed

Separate parsing and chunking in read_doc by @mskarlin in https://github.com/whitead/paper-qa/pull/254

New Contributors

@mskarlin made their first contribution in https://github.com/whitead/paper-qa/pull/254

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.2.1...v4.3.0

- Python
Published by whitead about 2 years ago

paper-qa - v4.2.1

What's Changed

Fixed bug for mixed encoding types from numpy by @whitead in https://github.com/whitead/paper-qa/pull/253

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.2.0...v4.2.1

- Python
Published by whitead about 2 years ago

paper-qa - v4.2.0

What's Changed

Upgrade of ruff, adding codespell, toml-sort by @jamesbraza in https://github.com/whitead/paper-qa/pull/251
Added convenience methods for building sparse/hybrid vector dbs by @whitead in https://github.com/whitead/paper-qa/pull/250

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.1.1...v4.2.0

- Python
Published by whitead about 2 years ago

paper-qa - v4.1.1

What's Changed

Fixed MMR alg on not correctly choosing most similar

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.1.0...v4.1.1

- Python
Published by whitead about 2 years ago

paper-qa - v4.1.0

What's Changed

delete the texts by @Dustyposa in https://github.com/whitead/paper-qa/pull/181
Making Doc hashable by @jamesbraza in https://github.com/whitead/paper-qa/pull/244
Latest black and prettier by @jamesbraza in https://github.com/whitead/paper-qa/pull/247
Add more vector embedding types by @whitead in https://github.com/whitead/paper-qa/pull/245
Allowing Doc subclasses to propagate to evidence by @jamesbraza in https://github.com/whitead/paper-qa/pull/246
Fixing crash when json.loads returns str by @jamesbraza in https://github.com/whitead/paper-qa/pull/248

New Contributors

@Dustyposa made their first contribution in https://github.com/whitead/paper-qa/pull/181

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.0.0...v4.1.0

- Python
Published by whitead about 2 years ago

paper-qa - v4.0.0

What's Changed

Version 4 with better open source model support and no langchain by @whitead in https://github.com/whitead/paper-qa/pull/223
Prevent error loading pdf: Added pymupdf/fitz open to get page count by @ekcomputer in https://github.com/whitead/paper-qa/pull/225
Removed nest_asyncio by @whitead in https://github.com/whitead/paper-qa/pull/227
JSON Mode & Callbacks by @whitead in https://github.com/whitead/paper-qa/pull/229
Removed features that required python 3.11 by @whitead in https://github.com/whitead/paper-qa/pull/230
Added status info on used contexts by @whitead in https://github.com/whitead/paper-qa/pull/231
Improved json parsing by @whitead in https://github.com/whitead/paper-qa/pull/232
Fixed deserialized computed fields issue by @whitead in https://github.com/whitead/paper-qa/pull/233
Propogated extra props in JSON by @whitead in https://github.com/whitead/paper-qa/pull/235
Added py.typed metadata file by @jamesbraza in https://github.com/whitead/paper-qa/pull/238
mypy config update by @jamesbraza in https://github.com/whitead/paper-qa/pull/237
More verbose comment on Answer.token_counts by @jamesbraza in https://github.com/whitead/paper-qa/pull/240
Added anthropic LLMs by @whitead in https://github.com/whitead/paper-qa/pull/241
Adjusted anthropic import by @whitead in https://github.com/whitead/paper-qa/pull/242

New Contributors

@ekcomputer made their first contribution in https://github.com/whitead/paper-qa/pull/225
@jamesbraza made their first contribution in https://github.com/whitead/paper-qa/pull/238

Full Changelog: https://github.com/whitead/paper-qa/compare/v3.13.4...v4.0.0

- Python
Published by whitead about 2 years ago

paper-qa - v4.0.0-pre.11

What's Changed

Adjusted anthropic import by @whitead in https://github.com/whitead/paper-qa/pull/242

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.0.0-pre.10...v4.0.0-pre.11

- Python
Published by whitead about 2 years ago

paper-qa - v4.0.0-pre.10

What's Changed

More verbose comment on Answer.token_counts by @jamesbraza in https://github.com/whitead/paper-qa/pull/240
Added anthropic LLMs by @whitead in https://github.com/whitead/paper-qa/pull/241

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.0.0-pre.9...v4.0.0-pre.10

- Python
Published by whitead about 2 years ago

paper-qa - v4.0.0-pre.9

What's Changed

Added py.typed metadata file by @jamesbraza in https://github.com/whitead/paper-qa/pull/238
mypy config update by @jamesbraza in https://github.com/whitead/paper-qa/pull/237

New Contributors

@jamesbraza made their first contribution in https://github.com/whitead/paper-qa/pull/238

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.0.0-pre.8...v4.0.0-pre.9

- Python
Published by whitead over 2 years ago

paper-qa - v4.0.0-pre.8

What's Changed

Propogated extra props in JSON by @whitead in https://github.com/whitead/paper-qa/pull/235

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.0.0-pre.7...v4.0.0-pre.8

- Python
Published by whitead over 2 years ago

paper-qa - v4.0.0-pre.7

What's Changed

Fixed deserialized computed fields issue by @whitead in https://github.com/whitead/paper-qa/pull/233

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.0.0-pre.6...v4.0.0-pre.7

- Python
Published by whitead over 2 years ago

paper-qa - v4.0.0-pre.6

What's Changed

Improved json parsing by @whitead in https://github.com/whitead/paper-qa/pull/232

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.0.0-pre.5...v4.0.0-pre.6

- Python
Published by whitead over 2 years ago

paper-qa - v4.0.0-pre.5

What's Changed

Added status info on used contexts by @whitead in https://github.com/whitead/paper-qa/pull/231

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.0.0-pre.4...v4.0.0-pre.5

- Python
Published by whitead over 2 years ago

paper-qa - v4.0.0-pre.4

What's Changed

Removed features that required python 3.11 by @whitead in https://github.com/whitead/paper-qa/pull/230

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.0.0-pre.3...v4.0.0-pre.4

- Python
Published by whitead over 2 years ago

paper-qa - v4.0.0-pre.3

What's Changed

JSON Mode & Callbacks by @whitead in https://github.com/whitead/paper-qa/pull/229

Full Changelog: https://github.com/whitead/paper-qa/compare/v4.0.0-pre.2...v4.0.0-pre.3

- Python
Published by whitead over 2 years ago

paper-qa - v4.0.0-pre.2

What's Changed

Removed nest_asyncio by @whitead in https://github.com/whitead/paper-qa/pull/227

Full Changelog: https://github.com/whitead/paper-qa/compare/4.0.0-pre.1...v4.0.0-pre.2

- Python
Published by whitead over 2 years ago

paper-qa - 4.0.0-pre.1

What's Changed

Version 4 with better open source model support and no langchain by @whitead in https://github.com/whitead/paper-qa/pull/223
Prevent error loading pdf: Added pymupdf/fitz open to get page count by @ekcomputer in https://github.com/whitead/paper-qa/pull/225

New Contributors

@ekcomputer made their first contribution in https://github.com/whitead/paper-qa/pull/225

Full Changelog: https://github.com/whitead/paper-qa/compare/v3.13.4...4.0.0-pre.1

- Python
Published by whitead over 2 years ago

paper-qa - v3.13.4

What's Changed

More score parsing improvements by @whitead in https://github.com/whitead/paper-qa/pull/218

Full Changelog: https://github.com/whitead/paper-qa/compare/v3.13.3...v3.13.4

- Python
Published by whitead over 2 years ago

paper-qa - v3.13.3

What's Changed

Fixed another score variant seen from LLMs by @whitead in https://github.com/whitead/paper-qa/pull/215

Full Changelog: https://github.com/whitead/paper-qa/compare/v3.13.2...v3.13.3

- Python
Published by whitead over 2 years ago

paper-qa - v3.13.2

What's Changed

Fixed eating paranthetical statements by @whitead in https://github.com/whitead/paper-qa/pull/211

Full Changelog: https://github.com/whitead/paper-qa/compare/v3.13.1...v3.13.2

- Python
Published by whitead over 2 years ago

paper-qa - v3.13.1

What's Changed

More robust check on citation finding for markdown @whitead in https://github.com/whitead/paper-qa/pull/210

Full Changelog: https://github.com/whitead/paper-qa/compare/v3.13.0...v3.13.1

- Python
Published by whitead over 2 years ago

paper-qa - v3.13.0

What's Changed

Added markdown output with citations by @whitead in https://github.com/whitead/paper-qa/pull/209

Full Changelog: https://github.com/whitead/paper-qa/compare/v3.12.0...v3.13.0

- Python
Published by whitead over 2 years ago

paper-qa - v3.12.0

What's Changed

Added option to strip indirect citations by @whitead in https://github.com/whitead/paper-qa/pull/203

Full Changelog: https://github.com/whitead/paper-qa/compare/v3.11.2...v3.12.0

- Python
Published by whitead over 2 years ago

paper-qa - v3.11.2

Updated for compatibility with langchain v0.0.303

- Python
Published by whitead over 2 years ago

paper-qa - v3.11.1

Updated support for langchain 0.0.294 which broke backwards compatibility for embeddings types

- Python
Published by whitead over 2 years ago

paper-qa - v3.11.0

What's Changed

Adjusted formatting of pre chain by @whitead in https://github.com/whitead/paper-qa/pull/195

Full Changelog: https://github.com/whitead/paper-qa/compare/v3.10.0...v3.11.0

- Python
Published by whitead over 2 years ago

paper-qa - v3.10.0

What's Changed

Added support for pydantic v2 by @whitead in https://github.com/whitead/paper-qa/pull/193

Full Changelog: https://github.com/whitead/paper-qa/compare/v3.9.1...v3.10.0

- Python
Published by whitead over 2 years ago

paper-qa - v3.9.1

What's Changed

Fixed typing and formatting problems by @whitead in https://github.com/whitead/paper-qa/pull/191

Full Changelog: https://github.com/whitead/paper-qa/compare/v3.9.0...v3.9.1

- Python
Published by whitead almost 3 years ago

paper-qa - v3.9.0

What's Changed

Made it possible to turn off llm rerank by @whitead in https://github.com/whitead/paper-qa/pull/190

Full Changelog: https://github.com/whitead/paper-qa/compare/v3.8.0...v3.9.0

- Python
Published by whitead almost 3 years ago

paper-qa - v3.8.0

What's Changed

Added option to skip summaries and adjusted prompts by @whitead in https://github.com/whitead/paper-qa/pull/187

Full Changelog: https://github.com/whitead/paper-qa/compare/v3.7.1...v3.8.0

- Python
Published by whitead almost 3 years ago

paper-qa - v3.7.1

Added check for adoc_match with models that cannot understand prompt
Pinned pydantic to 1

- Python
Published by whitead almost 3 years ago

paper-qa - v3.7.0

Adjusted prompts to reduce "cannot answers"
Reduced size of prompts

- Python
Published by whitead almost 3 years ago

paper-qa - V3.6.0

What's Changed

Update setup.py by @SamCox822 in https://github.com/whitead/paper-qa/pull/175
added ablations to paperQA to test performance effects by @odhran-o-d in https://github.com/whitead/paper-qa/pull/174
Fixed bug in accumulating contexts by @whitead

New Contributors

@SamCox822 made their first contribution in https://github.com/whitead/paper-qa/pull/175

Full Changelog: https://github.com/whitead/paper-qa/compare/v3.5.0...V3.6.0

- Python
Published by whitead almost 3 years ago

paper-qa - v3.5.0

What's Changed

Made system prompt configurable by @whitead in https://github.com/whitead/paper-qa/pull/170

Full Changelog: https://github.com/whitead/paper-qa/compare/v3.4.1...v3.5.0

- Python
Published by whitead almost 3 years ago

Recent Releases of paper-qa

paper-qa - v5.29.0

What's Changed

New Contributors

paper-qa - v5.28.0

What's Changed

paper-qa - v5.27.0

What's Changed

paper-qa - v5.26.0

What's Changed

paper-qa - v5.25.0

What's Changed

paper-qa - v5.24.0

What's Changed

paper-qa - v5.23.0

What's Changed

paper-qa - v5.22.0

What's Changed

New Contributors

paper-qa - v5.21.0

What's Changed

New Contributors

paper-qa - v5.20.0

What's Changed

paper-qa - v5.19.0

What's Changed

paper-qa - v5.18.0

What's Changed

paper-qa - v5.17.0

What's Changed

paper-qa - v5.16.1

What's Changed

paper-qa - v5.16.0

What's Changed

New Contributors

paper-qa - v5.15.0

What's Changed

paper-qa - v5.14.0

What's Changed

paper-qa - v5.13.0

What's Changed

New Contributors

paper-qa - v5.12.0

What's Changed

New Contributors

paper-qa - v5.11.1

What's Changed

New Contributors

paper-qa - v5.11.0

What's Changed

paper-qa - v5.10.2

What's Changed

New Contributors

paper-qa - v5.10.1

What's Changed

paper-qa - v5.10.0

What's Changed

paper-qa - v5.9.2

What's Changed

paper-qa - v5.9.1

What's Changed

paper-qa - v5.9.0

What's Changed

New Contributors

paper-qa - v5.6.1

paper-qa - v5.8.0

What's Changed

paper-qa - v5.7.0

What's Changed

paper-qa - v5.5.1

paper-qa - v5.6.0

Highlights

What's Changed

New Contributors

paper-qa - v5.5.0

Highlights

What's Changed

paper-qa - Hotfix to included `ordered=True` in tool exec calls

paper-qa - v5.3.3

paper-qa - v5.4.0