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respirometr

R Package for Analysing Respirometry Data

https://github.com/roaldarbol/respirometr

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    Found CITATION.cff file
  • ✓
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    Found codemeta.json file
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    Found .zenodo.json file
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    Found 1 DOI reference(s) in README
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    Links to: zenodo.org
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    Low similarity (17.3%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

R Package for Analysing Respirometry Data

Basic Info
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 5
  • Releases: 2
Created almost 2 years ago · Last pushed about 1 year ago
Metadata Files
Readme Changelog License Citation

README.Rmd 

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# respirometr


[![DOI](https://zenodo.org/badge/773406370.svg)](https://zenodo.org/doi/10.5281/zenodo.13235277)
[![R-CMD-check](https://github.com/roaldarbol/respirometr/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/roaldarbol/respirometr/actions/workflows/R-CMD-check.yaml)
[![respirometr status
badge](https://roaldarbol.r-universe.dev/badges/respirometr)](https://roaldarbol.r-universe.dev)
[![Codecov test coverage](https://codecov.io/gh/roaldarbol/respirometr/graph/badge.svg)](https://app.codecov.io/gh/roaldarbol/respirometr)


*An R toolbox for analysing respirometry data*

The primary aim of the *respirometr* package is to provide a standardised workflow for analysing respirometry data in a *tidyverse*-friendly syntax. 

## Installation

You can install the development version of *respirometr* with:

Type | Source | Command
---|---|-----------------------
Development | R-universe | `install.packages('respirometr', repos = c('https://roaldarbol.r-universe.dev', 'https://cloud.r-project.org'))`
Development | Github | `renv::install("roaldarbol/respirometr")`

Once you have installed the package, you can load it with:

```{r, eval=FALSE}
library("respirometr")
```

## Documentation

See our docs to go through the workflow, one-by-one:

- [Introduction to `respirometr`](https://www.roald-arboel.com/respirometr/articles/respirometr.html)
- [Read respirometry data](https://www.roald-arboel.com/respirometr/articles/read-licor.html)
- [Combine with movement data]()

## Status
> **Warning**
>
> 🏗️ The package is currently in early development and the interface is subject to change. Feel free to play around and provide feedback.


## Contribute

**If your favourite type of respirometry data or model of respirometer is not currently supported, we'd love to get a sample of your data to support it!** 

If you enjoy the package, please make sure to [cite it](#citation). If you find a bug, feel free to open an issue.










## Citation {#citation}

To cite *respirometr* in publications use:

```{r}
citation("respirometr")
```

Owner

  • Name: Mikkel Roald-Arbøl
  • Login: roaldarbol
  • Kind: user
  • Location: Brighton, UK
  • Company: University of Sussex

PhD student in Neuroscience @ University of Sussex

Citation (CITATION.cff) 

# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------

cff-version: 1.2.0
message: 'To cite package "respirometr" in publications use:'
type: software
license: MIT
title: 'respirometr: An R toolbox for analysing respirometry data'
date-released: 2025-01-07
version: 0.2.1
identifiers:
- type: url
  value: https://github.com/roaldarbol/respirometr/
abstract: An R toolbox for analysing respirometry data.
authors:
- family-names: Roald-Arbøl
  given-names: Mikkel
  email: respirometr.c2ymk@passmail.net
  orcid: https://orcid.org/0000-0002-9998-0058
repository-code: https://github.com/roaldarbol/respirometr
url: http://www.roald-arboel.com/respirometr/
contact:
- family-names: Roald-Arbøl
  given-names: Mikkel
  email: respirometr.c2ymk@passmail.net
  orcid: https://orcid.org/0000-0002-9998-0058
references:
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  notes: Imports
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  year: '2024'
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  repository: https://CRAN.R-project.org/package=janitor
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    given-names: Sam
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  year: '2024'
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- type: software
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  notes: Imports
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  repository: https://CRAN.R-project.org/package=lifecycle
  authors:
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  year: '2024'
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  abstract: 'readr: Read Rectangular Text Data'
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  year: '2024'
- type: software
  title: knitr
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  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
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  doi: 10.32614/CRAN.package.knitr
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Suggests
  url: https://pkgs.rstudio.com/rmarkdown/
  repository: https://CRAN.R-project.org/package=rmarkdown
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    given-names: JJ
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    given-names: Christophe
    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
  - family-names: McPherson
    given-names: Jonathan
    email: jonathan@posit.co
  - family-names: Luraschi
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    given-names: Kevin
    email: kevin@posit.co
  - family-names: Atkins
    given-names: Aron
    email: aron@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
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    given-names: Richard
    email: rich@posit.co
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2024'
  doi: 10.32614/CRAN.package.rmarkdown
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  url: https://testthat.r-lib.org
  repository: https://CRAN.R-project.org/package=testthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2024'
  doi: 10.32614/CRAN.package.testthat
  version: '>= 3.0.0'
- type: software
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  notes: Suggests
  url: https://here.r-lib.org/
  repository: https://CRAN.R-project.org/package=here
  authors:
  - family-names: Müller
    given-names: Kirill
    email: krlmlr+r@mailbox.org
    orcid: https://orcid.org/0000-0002-1416-3412
  year: '2024'
  doi: 10.32614/CRAN.package.here
- type: software
  title: readxl
  abstract: 'readxl: Read Excel Files'
  notes: Suggests
  url: https://readxl.tidyverse.org
  repository: https://CRAN.R-project.org/package=readxl
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
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    given-names: Jennifer
    email: jenny@posit.co
    orcid: https://orcid.org/0000-0002-6983-2759
  year: '2024'
  doi: 10.32614/CRAN.package.readxl
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  title: stringr
  abstract: 'stringr: Simple, Consistent Wrappers for Common String Operations'
  notes: Suggests
  url: https://stringr.tidyverse.org
  repository: https://CRAN.R-project.org/package=stringr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2024'
  doi: 10.32614/CRAN.package.stringr
- type: software
  title: tinyplot
  abstract: 'tinyplot: Lightweight Extension of the Base R Graphics System'
  notes: Suggests
  url: https://grantmcdermott.com/tinyplot/
  repository: https://CRAN.R-project.org/package=tinyplot
  authors:
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    given-names: Grant
    email: gmcd@amazon.com
    orcid: https://orcid.org/0000-0001-7883-8573
  - family-names: Arel-Bundock
    given-names: Vincent
    email: vincent.arel-bundock@umontreal.ca
    orcid: https://orcid.org/0000-0003-1995-6531
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    given-names: Achim
    email: Achim.Zeileis@R-project.org
    orcid: https://orcid.org/0000-0003-0918-3766
  year: '2024'
  doi: 10.32614/CRAN.package.tinyplot
- type: software
  title: tinytable
  abstract: 'tinytable: Simple and Configurable Tables in ''HTML'', ''LaTeX'', ''Markdown'',
    ''Word'', ''PNG'', ''PDF'', and ''Typst'' Formats'
  notes: Suggests
  url: https://vincentarelbundock.github.io/tinytable/
  repository: https://CRAN.R-project.org/package=tinytable
  authors:
  - family-names: Arel-Bundock
    given-names: Vincent
    email: vincent.arel-bundock@umontreal.ca
    orcid: https://orcid.org/0000-0003-2042-7063
  year: '2024'
  doi: 10.32614/CRAN.package.tinytable
- type: software
  title: ggplot2
  abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics'
  notes: Suggests
  url: https://ggplot2.tidyverse.org
  repository: https://CRAN.R-project.org/package=ggplot2
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    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
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    given-names: Winston
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    orcid: https://orcid.org/0000-0002-5147-4711
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  year: '2024'
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- type: software
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  abstract: 'patchwork: The Composer of Plots'
  notes: Suggests
  url: https://patchwork.data-imaginist.com
  repository: https://CRAN.R-project.org/package=patchwork
  authors:
  - family-names: Pedersen
    given-names: Thomas Lin
    email: thomasp85@gmail.com
    orcid: https://orcid.org/0000-0002-5147-4711
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  abstract: 'performance: Assessment of Regression Models Performance'
  notes: Suggests
  url: https://easystats.github.io/performance/
  repository: https://CRAN.R-project.org/package=performance
  authors:
  - family-names: Lüdecke
    given-names: Daniel
    email: d.luedecke@uke.de
    orcid: https://orcid.org/0000-0002-8895-3206
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    email: dom.makowski@gmail.com
    orcid: https://orcid.org/0000-0001-5375-9967
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    given-names: Mattan S.
    email: matanshm@post.bgu.ac.il
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    email: patilindrajeet.science@gmail.com
    orcid: https://orcid.org/0000-0003-1995-6531
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  doi: 10.32614/CRAN.package.performance
- type: software
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  abstract: 'see: Model Visualisation Toolbox for ''easystats'' and ''ggplot2'''
  notes: Suggests
  url: https://easystats.github.io/see/
  repository: https://CRAN.R-project.org/package=see
  authors:
  - family-names: Lüdecke
    given-names: Daniel
    email: d.luedecke@uke.de
    orcid: https://orcid.org/0000-0002-8895-3206
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    given-names: Dominique
    email: dom.makowski@gmail.com
    orcid: https://orcid.org/0000-0001-5375-9967
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    given-names: Indrajeet
    email: patilindrajeet.science@gmail.com
    orcid: https://orcid.org/0000-0003-1995-6531
  - family-names: Ben-Shachar
    given-names: Mattan S.
    email: matanshm@post.bgu.ac.il
    orcid: https://orcid.org/0000-0002-4287-4801
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    orcid: https://orcid.org/0000-0001-9560-6336
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    orcid: https://orcid.org/0000-0002-7825-7573
  year: '2024'
  doi: 10.32614/CRAN.package.see
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  title: markdown
  abstract: 'markdown: Render Markdown with ''commonmark'''
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  url: https://github.com/rstudio/markdown
  repository: https://CRAN.R-project.org/package=markdown
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  repository: https://CRAN.R-project.org/package=cffr
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    email: diego.hernangomezherrero@gmail.com
    orcid: https://orcid.org/0000-0001-8457-4658
  year: '2024'
  doi: 10.32614/CRAN.package.cffr

GitHub Events

Total
  • Create event: 8
  • Release event: 2
  • Issues event: 25
  • Delete event: 5
  • Issue comment event: 4
  • Push event: 43
  • Pull request event: 14
Last Year
  • Create event: 8
  • Release event: 2
  • Issues event: 25
  • Delete event: 5
  • Issue comment event: 4
  • Push event: 43
  • Pull request event: 14

Committers

Last synced: 8 months ago

All Time
  • Total Commits: 46
  • Total Committers: 2
  • Avg Commits per committer: 23.0
  • Development Distribution Score (DDS): 0.022
Past Year
  • Commits: 40
  • Committers: 2
  • Avg Commits per committer: 20.0
  • Development Distribution Score (DDS): 0.025
Top Committers
Name Email Commits
Mikkel Roald-Arbøl g****a@s****o 45
Mikkel Roald-Arbøl 2****l 1
Committer Domains (Top 20 + Academic)
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Issues and Pull Requests

Last synced: 6 months ago

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  • Total issues: 15
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  • Average comments per issue: 0.27
  • Average comments per pull request: 0.0
  • Merged pull requests: 11
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 15
  • Pull requests: 11
  • Average time to close issues: 6 days
  • Average time to close pull requests: 27 minutes
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 0.27
  • Average comments per pull request: 0.0
  • Merged pull requests: 11
  • Bot issues: 0
  • Bot pull requests: 0
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Top Authors
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  • roaldarbol (15)
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Top Labels
Issue Labels
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Dependencies

.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.5.0 composite
  • actions/checkout v4 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran