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Recent Releases of quantms

quantms - 1.6.0 - Munich

What's Changed

  • increase dev version 1.6.0dev by @ypriverol in https://github.com/bigbio/quantms/pull/556
  • README_links by @enryH in https://github.com/bigbio/quantms/pull/560
  • Template update 3.3.2 of nf-core an other minor updates by @ypriverol in https://github.com/bigbio/quantms/pull/566
  • Small changes remaining from Template 3.3.2 update by @ypriverol in https://github.com/bigbio/quantms/pull/567
  • support pmultiqc 0.0.31 by @yueqixuan in https://github.com/bigbio/quantms/pull/570
  • update quantms-rescoring and support AalphaPeptDeep model by @daichengxin in https://github.com/bigbio/quantms/pull/571
  • minor changes in the rescoring version by @ypriverol in https://github.com/bigbio/quantms/pull/573
  • preparing for quantms release 1.6.0 by @ypriverol in https://github.com/bigbio/quantms/pull/575
  • Release 1.6.0 by @ypriverol in https://github.com/bigbio/quantms/pull/574

New Contributors

  • @yueqixuan made their first contribution in https://github.com/bigbio/quantms/pull/570

Full Changelog: https://github.com/bigbio/quantms/compare/1.5.0...1.6.0

- Nextflow
Published by ypriverol 6 months ago

quantms - 1.5.0 - Zürich

What's Changed

  • Update for README.md by @imeMFK01 in https://github.com/bigbio/quantms/pull/531
  • preparing for version 1.4.1dev by @ypriverol in https://github.com/bigbio/quantms/pull/530
  • pmultiqc updated 0.0.27 version by @ypriverol in https://github.com/bigbio/quantms/pull/537
  • quantms-utils 0.0.23 & sdrf-pipelines 0.0.32 by @ypriverol in https://github.com/bigbio/quantms/pull/539
  • add mztab to results for pmultiqc by @ypriverol in https://github.com/bigbio/quantms/pull/541
  • pmultiqc version increased to 0.0.28. Error fixed with diann_report.tsv by @ypriverol in https://github.com/bigbio/quantms/pull/542
  • add Fabian Egli as contributor by @fabianegli in https://github.com/bigbio/quantms/pull/543
  • Fixing bug issues with SNR; quantms-utils -> quantms-rescoring by @ypriverol in https://github.com/bigbio/quantms/pull/544
  • small bug in SNR step by @ypriverol in https://github.com/bigbio/quantms/pull/545
  • Minor refinements with quantms code style, update msstats LFQ -> 4.14.0 by @ypriverol in https://github.com/bigbio/quantms/pull/547
  • prepare for release 1.4.1 by @ypriverol in https://github.com/bigbio/quantms/pull/548
  • Standardization of names in meta.yml for all tools & Big refactoring for all modules to subfolders by @ypriverol in https://github.com/bigbio/quantms/pull/551
  • removed features extract and idscoreswitcher by @daichengxin in https://github.com/bigbio/quantms/pull/554
  • Adding met-excision as parameter to DIA and DDA workflows by @ypriverol in https://github.com/bigbio/quantms/pull/555
  • Release with multiple bug fixed 1.5.0 by @ypriverol in https://github.com/bigbio/quantms/pull/549

New Contributors

  • @imeMFK01 made their first contribution in https://github.com/bigbio/quantms/pull/531

Full Changelog: https://github.com/bigbio/quantms/compare/1.4.0...1.5.0

- Nextflow
Published by ypriverol 9 months ago

quantms - 1.4.0 - Tübingen

What's Changed

  • quantms 0.0.10 -> 0.0.11 by @ypriverol in https://github.com/bigbio/quantms/pull/419
  • fixed msgfdb index memory bug by @daichengxin in https://github.com/bigbio/quantms/pull/420
  • update to openms 3.2.0 by @ypriverol in https://github.com/bigbio/quantms/pull/423
  • Dev by @ypriverol in https://github.com/bigbio/quantms/pull/426
  • update quantms-utils=0.0.12 by @ypriverol in https://github.com/bigbio/quantms/pull/429
  • Revert thermorawfileparser by @daichengxin in https://github.com/bigbio/quantms/pull/433
  • update figure by @daichengxin in https://github.com/bigbio/quantms/pull/435
  • minor changes - remove bib-nodes.config by @ypriverol in https://github.com/bigbio/quantms/pull/438
  • Improving configs for OpenMS dev and DIANN versions over 1.8.1 by @ypriverol in https://github.com/bigbio/quantms/pull/441
  • update confs - dev and pride ebi by @ypriverol in https://github.com/bigbio/quantms/pull/443
  • update container for msgf_plus indexing. by @ypriverol in https://github.com/bigbio/quantms/pull/444
  • changes in pride slurm config by @ypriverol in https://github.com/bigbio/quantms/pull/445
  • update msgf_plus process to remove the process tag by @ypriverol in https://github.com/bigbio/quantms/pull/446
  • minor changes in pride resource limits by @ypriverol in https://github.com/bigbio/quantms/pull/449
  • Remove posterior_probabilities parameter. by @ypriverol in https://github.com/bigbio/quantms/pull/450
  • quanmts-utils 0.0.15 -> 0.0.17: ms2rescore bug solved by @ypriverol in https://github.com/bigbio/quantms/pull/451
  • Support for DIANN 1.9.2, output all files. by @daichengxin in https://github.com/bigbio/quantms/pull/454
  • Optimization of process resources by @ypriverol in https://github.com/bigbio/quantms/pull/456
  • Fixing quantms rescoring bugs by @ypriverol in https://github.com/bigbio/quantms/pull/462
  • major change to run CI on dev using dev conf by @ypriverol in https://github.com/bigbio/quantms/pull/464
  • quantms-rescoring 0.0.3 -> 0.0.4, fix ms2rescore by @ypriverol in https://github.com/bigbio/quantms/pull/472
  • openms release 3.2.0 -> 3.3.0 by @ypriverol in https://github.com/bigbio/quantms/pull/474
  • more help added to MSGF protocol, update template 3.2.0 by @ypriverol in https://github.com/bigbio/quantms/pull/476
  • change the error ms2rescore to the corresponding search engine by @ypriverol in https://github.com/bigbio/quantms/pull/483
  • support for DIA-NN 2.0 by @daichengxin in https://github.com/bigbio/quantms/pull/485
  • Fixed MSGF TMT MS3 by @daichengxin in https://github.com/bigbio/quantms/pull/486
  • quantms-rescoring changed 0.0.5 by @ypriverol in https://github.com/bigbio/quantms/pull/489
  • Update CHANGELOG.md by @daichengxin in https://github.com/bigbio/quantms/pull/490
  • Generation of MS1 features on mzml statistics, quantms-utils 0.0.20 by @ypriverol in https://github.com/bigbio/quantms/pull/494
  • Changes the CI/CD for testing Dev OpenMS in Dev PRs by @ypriverol in https://github.com/bigbio/quantms/pull/496
  • quantms-rescoring 0.0.6 by @ypriverol in https://github.com/bigbio/quantms/pull/498
  • Small bug (issue #499) introduced in the config files fixed by @ypriverol in https://github.com/bigbio/quantms/pull/500
  • add ms2rescore singularity to wave by @ypriverol in https://github.com/bigbio/quantms/pull/503
  • Improving DIA workflow with new parameters, and logs originally from DIANN (original issue #481 comments) by @an-altosian in https://github.com/bigbio/quantms/pull/495
  • Controlling multiple logs in CI/CD by @ypriverol in https://github.com/bigbio/quantms/pull/508
  • avoid silent skipping of ConsensusID by @enryH in https://github.com/bigbio/quantms/pull/501
  • dump parameters of pipeline by @enryH in https://github.com/bigbio/quantms/pull/502
  • update quantms-rescoring 0.0.6 -> 0.0.7 by @ypriverol in https://github.com/bigbio/quantms/pull/509
  • [DO NOT MERGE] Big PR to remove Conda Support by @ypriverol in https://github.com/bigbio/quantms/pull/515
  • Fixed small bug with singularity in OpenMS by @ypriverol in https://github.com/bigbio/quantms/pull/518
  • quantms-rescoring 0.0.9 and cleaning spectra step by @ypriverol in https://github.com/bigbio/quantms/pull/519
  • update name of variable in process by @ypriverol in https://github.com/bigbio/quantms/pull/520
  • Release 1.4.0 version in Bigbio by @ypriverol in https://github.com/bigbio/quantms/pull/521

New Contributors

  • @an-altosian made their first contribution in https://github.com/bigbio/quantms/pull/495
  • @enryH made their first contribution in https://github.com/bigbio/quantms/pull/501

Full Changelog: https://github.com/bigbio/quantms/compare/1.3.0...1.4.0

- Nextflow
Published by ypriverol 10 months ago

quantms - bigbio/quantms v1.3.0 - Santiago de Cuba

What's Changed

  • Add new modules by @daichengxin in https://github.com/bigbio/quantms/pull/1
  • Add input subworkflow and thermorawfileparser by @daichengxin in https://github.com/bigbio/quantms/pull/3
  • Add DatabaseSearchEngines Subworkflow by @daichengxin in https://github.com/bigbio/quantms/pull/14
  • Add PSMRescoring、PSMFDRControl、Phosphoscoring、ProteinInference、Featur… by @daichengxin in https://github.com/bigbio/quantms/pull/18
  • docker openms 6.0 -> 2.7pre by @ypriverol in https://github.com/bigbio/quantms/pull/19
  • Add LFQ part and fixed bugs by @daichengxin in https://github.com/bigbio/quantms/pull/20
  • add pmulitqc by @daichengxin in https://github.com/bigbio/quantms/pull/21
  • fixed bug and publish files by @daichengxin in https://github.com/bigbio/quantms/pull/22
  • Improve docs by @ypriverol in https://github.com/bigbio/quantms/pull/23
  • minor changes by @ypriverol in https://github.com/bigbio/quantms/pull/25
  • docs by @ypriverol in https://github.com/bigbio/quantms/pull/26
  • docs by @ypriverol in https://github.com/bigbio/quantms/pull/27
  • docs improvements by @ypriverol in https://github.com/bigbio/quantms/pull/28
  • docs by @ypriverol in https://github.com/bigbio/quantms/pull/29
  • docs by @ypriverol in https://github.com/bigbio/quantms/pull/30
  • docs by @ypriverol in https://github.com/bigbio/quantms/pull/31
  • dcos by @ypriverol in https://github.com/bigbio/quantms/pull/32
  • docs by @ypriverol in https://github.com/bigbio/quantms/pull/33
  • clean docs by @ypriverol in https://github.com/bigbio/quantms/pull/34
  • quantms by @ypriverol in https://github.com/bigbio/quantms/pull/40
  • minor changes by @ypriverol in https://github.com/bigbio/quantms/pull/41
  • improvements by @ypriverol in https://github.com/bigbio/quantms/pull/42
  • improvements conda by @ypriverol in https://github.com/bigbio/quantms/pull/43
  • improvements conda by @ypriverol in https://github.com/bigbio/quantms/pull/44
  • improvements by @ypriverol in https://github.com/bigbio/quantms/pull/45
  • improvements by @ypriverol in https://github.com/bigbio/quantms/pull/46
  • conda improvements by @ypriverol in https://github.com/bigbio/quantms/pull/47
  • improve conda by @ypriverol in https://github.com/bigbio/quantms/pull/49
  • conda by @ypriverol in https://github.com/bigbio/quantms/pull/50
  • update name by @daichengxin in https://github.com/bigbio/quantms/pull/51
  • output msgf and comet idxml file by @daichengxin in https://github.com/bigbio/quantms/pull/52
  • conda increase to 0.0.19 by @ypriverol in https://github.com/bigbio/quantms/pull/53
  • openms-2.7 in bioconda by @ypriverol in https://github.com/bigbio/quantms/pull/54
  • openms in bioconda by @ypriverol in https://github.com/bigbio/quantms/pull/55
  • openms-2.7 in bioconda by @ypriverol in https://github.com/bigbio/quantms/pull/56
  • rollback inference by @ypriverol in https://github.com/bigbio/quantms/pull/57
  • update quantms by @daichengxin in https://github.com/bigbio/quantms/pull/59
  • idmapper changes by @ypriverol in https://github.com/bigbio/quantms/pull/60
  • ebicluster by @ypriverol in https://github.com/bigbio/quantms/pull/61
  • fixed by @ypriverol in https://github.com/bigbio/quantms/pull/63
  • minor change by @ypriverol in https://github.com/bigbio/quantms/pull/64
  • TMT improvements using openms=2.8.0dev by @ypriverol in https://github.com/bigbio/quantms/pull/67
  • Add output files by @daichengxin in https://github.com/bigbio/quantms/pull/70
  • forgot image by @jpfeuffer in https://github.com/bigbio/quantms/pull/72
  • manual merge of the template update 2.2 branch by @jpfeuffer in https://github.com/bigbio/quantms/pull/73
  • version fix by @daichengxin in https://github.com/bigbio/quantms/pull/78
  • remove multiqc by @daichengxin in https://github.com/bigbio/quantms/pull/82
  • add DIA workflow by @daichengxin in https://github.com/bigbio/quantms/pull/112
  • update meta.nf by @daichengxin in https://github.com/bigbio/quantms/pull/116
  • fixed error by @daichengxin in https://github.com/bigbio/quantms/pull/124
  • diann container from ypriverol -> biocontainers by @ypriverol in https://github.com/bigbio/quantms/pull/118
  • Template 2.3 update by @ypriverol in https://github.com/bigbio/quantms/pull/126
  • Utils updated by @ypriverol in https://github.com/bigbio/quantms/pull/128
  • Documentation for nf-core by @ypriverol in https://github.com/bigbio/quantms/pull/129
  • DIA improvement by @daichengxin in https://github.com/bigbio/quantms/pull/132
  • minor changes to improve CI speed by @ypriverol in https://github.com/bigbio/quantms/pull/133
  • increase min_peptide in test by @ypriverol in https://github.com/bigbio/quantms/pull/134
  • minor fix by @daichengxin in https://github.com/bigbio/quantms/pull/135
  • Template updated 2.3.1 by @ypriverol in https://github.com/bigbio/quantms/pull/139
  • Template update 2.3.2 by @jpfeuffer in https://github.com/bigbio/quantms/pull/142
  • updates by @ypriverol in https://github.com/bigbio/quantms/pull/143
  • Major fix by @daichengxin in https://github.com/bigbio/quantms/pull/145
  • pull nf-core and update pmultiqc by @daichengxin in https://github.com/bigbio/quantms/pull/152
  • add DIA triqler and MSstats by @daichengxin in https://github.com/bigbio/quantms/pull/153
  • diann 1.8.1 by @ypriverol in https://github.com/bigbio/quantms/pull/154
  • skip msstats tests in PTM tests by @ypriverol in https://github.com/bigbio/quantms/pull/155
  • Master by @ypriverol in https://github.com/bigbio/quantms/pull/157
  • Enhancement/logging by @daichengxin in https://github.com/bigbio/quantms/pull/161
  • [FIX] AWS and conda by @jpfeuffer in https://github.com/bigbio/quantms/pull/163
  • add MSstatsTMT and update MSstats by @daichengxin in https://github.com/bigbio/quantms/pull/158
  • Tests changed, move them to test-datasets by @ypriverol in https://github.com/bigbio/quantms/pull/167
  • Sync with nf-core by @jpfeuffer in https://github.com/bigbio/quantms/pull/170
  • Sync with nf-core by @jpfeuffer in https://github.com/bigbio/quantms/pull/174
  • refactor DIA-NN step 1 by @daichengxin in https://github.com/bigbio/quantms/pull/169
  • add name of each ID step by @daichengxin in https://github.com/bigbio/quantms/pull/176
  • restruct DIA-NN step2 by @daichengxin in https://github.com/bigbio/quantms/pull/178
  • Restruct DIA-NN step 3,4,5 by @daichengxin in https://github.com/bigbio/quantms/pull/179
  • Diann update by @ypriverol in https://github.com/bigbio/quantms/pull/182
  • Changelog and DIA-NN double-check by @daichengxin in https://github.com/bigbio/quantms/pull/184
  • [Docu] update metro by @jpfeuffer in https://github.com/bigbio/quantms/pull/185
  • [FIX/FEATURE] Add exp. wide PSM-FDR. Rename FDR params. Slightly change usage. by @jpfeuffer in https://github.com/bigbio/quantms/pull/187
  • enforce style and add aws test by @daichengxin in https://github.com/bigbio/quantms/pull/186
  • minor fixed by @daichengxin in https://github.com/bigbio/quantms/pull/193
  • quick fix by @daichengxin in https://github.com/bigbio/quantms/pull/195
  • rename output by @daichengxin in https://github.com/bigbio/quantms/pull/200
  • add msstats_in by @daichengxin in https://github.com/bigbio/quantms/pull/204
  • Update main.nf by @ypriverol in https://github.com/bigbio/quantms/pull/203
  • fixed by @daichengxin in https://github.com/bigbio/quantms/pull/207
  • update pmultiqc by @daichengxin in https://github.com/bigbio/quantms/pull/208
  • Added the decoys to TMT output by @ypriverol in https://github.com/bigbio/quantms/pull/210
  • enable mzTab for DIA-NN by @WangHong007 in https://github.com/bigbio/quantms/pull/205
  • print warning info when run DIA-NN with conda by @daichengxin in https://github.com/bigbio/quantms/pull/212
  • fix version by @daichengxin in https://github.com/bigbio/quantms/pull/213
  • small fixs by @WangHong007 in https://github.com/bigbio/quantms/pull/218
  • Upgrade 2.5.1 template by @ypriverol in https://github.com/bigbio/quantms/pull/220
  • Tetsrun by @fabianegli in https://github.com/bigbio/quantms/pull/222
  • Code maintenance by @fabianegli in https://github.com/bigbio/quantms/pull/221
  • Update pmultiqc module to 0.0.14 by @ypriverol in https://github.com/bigbio/quantms/pull/225
  • Test pmultiqc v0.0.15 to see if it works by @WangHong007 in https://github.com/bigbio/quantms/pull/226
  • testing with dev version of OpenMS 2.8.0 by @ypriverol in https://github.com/bigbio/quantms/pull/229
  • dynamic version by @WangHong007 in https://github.com/bigbio/quantms/pull/230
  • Fix config warnings by @jpfeuffer in https://github.com/bigbio/quantms/pull/232
  • fixed bugs by @daichengxin in https://github.com/bigbio/quantms/pull/234
  • improve sdrf validation hint by @daichengxin in https://github.com/bigbio/quantms/pull/237
  • enable spectra_ref in mzTab by @WangHong007 in https://github.com/bigbio/quantms/pull/240
  • pmultiqc move from 0.0.17 -> 0.0.18 by @ypriverol in https://github.com/bigbio/quantms/pull/242
  • pmultiqc:0.0.18 -> 0.0.19 by @ypriverol in https://github.com/bigbio/quantms/pull/249
  • Add maxmissedcleavages option to msgf by @jpfeuffer in https://github.com/bigbio/quantms/pull/245
  • add msstats threshold by @daichengxin in https://github.com/bigbio/quantms/pull/252
  • Parallel mzml_statistics by @WangHong007 in https://github.com/bigbio/quantms/pull/257
  • Reduce memory usage in diann_convert by @WangHong007 in https://github.com/bigbio/quantms/pull/260
  • Major update of latest template from nf-core by @ypriverol in https://github.com/bigbio/quantms/pull/262
  • Dev by @ypriverol in https://github.com/bigbio/quantms/pull/264
  • small change. by @ypriverol in https://github.com/bigbio/quantms/pull/265
  • Fixing multiple bugs of sage quantms by @ypriverol in https://github.com/bigbio/quantms/pull/279
  • Dev by @ypriverol in https://github.com/bigbio/quantms/pull/281
  • sdrf-pipelines version 0.0.24 and parameters for msstats tmt by @ypriverol in https://github.com/bigbio/quantms/pull/284
  • update some process to openms dev by @ypriverol in https://github.com/bigbio/quantms/pull/289
  • Dev by @ypriverol in https://github.com/bigbio/quantms/pull/291
  • id transfer threshold update by @ypriverol in https://github.com/bigbio/quantms/pull/292
  • updating percolator for testing by @ypriverol in https://github.com/bigbio/quantms/pull/293
  • updating nextflow.config by @ypriverol in https://github.com/bigbio/quantms/pull/294
  • Feature/bruker data by @jspaezp in https://github.com/bigbio/quantms/pull/275
  • First iteration of bug fixing in Bruker support by @ypriverol in https://github.com/bigbio/quantms/pull/295
  • pmultiqc 0.21 -> 0.22 by @ypriverol in https://github.com/bigbio/quantms/pull/297
  • major refactoring of PLFQ to a probabilistic approach by @ypriverol in https://github.com/bigbio/quantms/pull/300
  • error fixed docker hub diann by @ypriverol in https://github.com/bigbio/quantms/pull/302
  • Dev by @ypriverol in https://github.com/bigbio/quantms/pull/304
  • Dev by @ypriverol in https://github.com/bigbio/quantms/pull/305
  • Add warning info and set mass accurancy automatic for DIA when Dalton input(Don't merge) by @daichengxin in https://github.com/bigbio/quantms/pull/306
  • fixed errors by @daichengxin in https://github.com/bigbio/quantms/pull/307
  • Release of Openms 3.1.0 by @ypriverol in https://github.com/bigbio/quantms/pull/308
  • Dev by @ypriverol in https://github.com/bigbio/quantms/pull/310
  • Fallback version reporting of zip by @jspaezp in https://github.com/bigbio/quantms/pull/312
  • Feature/retain final speclib by @jspaezp in https://github.com/bigbio/quantms/pull/313
  • update dda and bruker report by @daichengxin in https://github.com/bigbio/quantms/pull/314
  • Error fix in msgf+ module. by @ypriverol in https://github.com/bigbio/quantms/pull/316
  • Improving doc by @daichengxin in https://github.com/bigbio/quantms/pull/319
  • standardize spectrum identifier for bruker data by @daichengxin in https://github.com/bigbio/quantms/pull/321
  • fixed multiple bugs and nf-template by @daichengxin in https://github.com/bigbio/quantms/pull/331
  • feature/skip preliminary analysis on dia by @jspaezp in https://github.com/bigbio/quantms/pull/335
  • library creation by @daichengxin in https://github.com/bigbio/quantms/pull/341
  • changes in figure, update. by @ypriverol in https://github.com/bigbio/quantms/pull/348
  • Dev by @ypriverol in https://github.com/bigbio/quantms/pull/352
  • Reduce staging overhead on subset workflows by @jspaezp in https://github.com/bigbio/quantms/pull/355
  • update template 2.13 by @ypriverol in https://github.com/bigbio/quantms/pull/353
  • sdrf-pipelines 0.0.24 -> 0.0.25 by @ypriverol in https://github.com/bigbio/quantms/pull/356
  • Chymotrypsin -> Chymotrypsin/P in MSGF+ by @ypriverol in https://github.com/bigbio/quantms/pull/357
  • Template update 2.13.1 by @ypriverol in https://github.com/bigbio/quantms/pull/358
  • pmultiqc 0.0.25 by @ypriverol in https://github.com/bigbio/quantms/pull/359
  • pmultiqc 0.0.24 by @ypriverol in https://github.com/bigbio/quantms/pull/360
  • first PR about identification subworkflow by @daichengxin in https://github.com/bigbio/quantms/pull/351
  • This PR add the parameter of charge to SAGE processor and other properties by @ypriverol in https://github.com/bigbio/quantms/pull/363
  • sdrf-pipelines 0.0.25 -> 0.0.26 by @ypriverol in https://github.com/bigbio/quantms/pull/365
  • MonoIsotopic mass for DIANN peptides with unknown AA by @ypriverol in https://github.com/bigbio/quantms/pull/369
  • add optional ms2rescore step by @daichengxin in https://github.com/bigbio/quantms/pull/362
  • Add dda id ci and fixed some bugs by @daichengxin in https://github.com/bigbio/quantms/pull/373
  • add msgfdb_indexing by @daichengxin in https://github.com/bigbio/quantms/pull/374
  • ms2rescore for quant workflow and fixed some bugs by @daichengxin in https://github.com/bigbio/quantms/pull/378
  • [HOTFIX] pipeline failing without id_only because of missing outputs by @jpfeuffer in https://github.com/bigbio/quantms/pull/382
  • Bug/samplecheck by @daichengxin in https://github.com/bigbio/quantms/pull/387
  • Make validation of ontology terms optional by @wfondrie in https://github.com/bigbio/quantms/pull/386
  • Update sdrf-pipelines 0.0.26 -> 0.0.27 by @ypriverol in https://github.com/bigbio/quantms/pull/388
  • diann 1.8.1 -> 1.9.1dev by @daichengxin in https://github.com/bigbio/quantms/pull/389
  • Add verification for tar unpacking by @wfondrie in https://github.com/bigbio/quantms/pull/396
  • first commit msstatistics csv -> parquet [DO NOT MERGE] by @ypriverol in https://github.com/bigbio/quantms/pull/391
  • sdrf-pipelines to 0.0.29 by @ypriverol in https://github.com/bigbio/quantms/pull/397
  • Make files selected with random_preanalysis reproducible. by @wfondrie in https://github.com/bigbio/quantms/pull/400
  • Migration from python in house scripts to quantms-utils by @ypriverol in https://github.com/bigbio/quantms/pull/398
  • Update branch from dev by @ypriverol in https://github.com/bigbio/quantms/pull/401
  • Minor changes including docs and nextflow configs by @ypriverol in https://github.com/bigbio/quantms/pull/403
  • add spectrum2feature by @daichengxin in https://github.com/bigbio/quantms/pull/404
  • tdf2mzml in bigbio by @ypriverol in https://github.com/bigbio/quantms/pull/407
  • quantms-utils 0.0.8 -> 0.0.9 by @ypriverol in https://github.com/bigbio/quantms/pull/409
  • clean and optimization by @daichengxin in https://github.com/bigbio/quantms/pull/412
  • minor updating doc by @daichengxin in https://github.com/bigbio/quantms/pull/413
  • Remove tests that depend on nf-core TOKENS by @ypriverol in https://github.com/bigbio/quantms/pull/414
  • Release of quantms v1.3.0 by @ypriverol in https://github.com/bigbio/quantms/pull/405

New Contributors

  • @WangHong007 made their first contribution in https://github.com/bigbio/quantms/pull/205
  • @fabianegli made their first contribution in https://github.com/bigbio/quantms/pull/222
  • @jspaezp made their first contribution in https://github.com/bigbio/quantms/pull/275
  • @wfondrie made their first contribution in https://github.com/bigbio/quantms/pull/386

Full Changelog: https://github.com/bigbio/quantms/commits/v1.3.0

- Nextflow
Published by ypriverol over 1 year ago