mosuite - MOSuite 0.2.0

• Any user-facing function can now be called from the unix command line. (#126, #127) Usage: mosuite [function] --json=path/to/args See the new cli vignette for detailed instructions.
• MOSuite is now archived in Zenodo with a DOI: 10.5281/zenodo.16371580

- R
Published by kelly-sovacool 9 months ago

mosuite - MOSuite 0.1.0

This is the first release of MOSuite 🎉

• Note: at the start of development, this package was called reneeTools. Later it was renamed to MOSuite. (#76)

Main functions & classes

• multiOmicDataSet (#16, #28)
  • create_multiOmicDataSet_from_files()
  • create_multiOmicDataSet_from_dataframes()
• run_deseq2()
• calc_cpm() (#38)
• filter_counts() (#38)
• clean_raw_counts() (#79)
• normalize_counts() (#82)
• batch_correct_counts() (#87)
• diff_counts() (#102)
• filter_diff() (#110)

visualization

• plot_histogram() (#96)
• plot_corr_heatmap() (#96)
• plot_expr_heatmap() (#90, #96)
• plot_pca() (#88, #96)
• plot_volcano_enhanced() (#112)
• plot_volcano_summary() (#112)
• plot_venn_diagram() (#111)

vignettes

• intro
• visualization
• memory
• renee

- R
Published by kelly-sovacool 10 months ago