vcftomaf - 1.2.0 - Burgundy Piglet

Added

• #24 - Enable VEP annotation with vcf2maf module (@famosab)

Fixed

• #25 - Template update to 3.1.1 (@famosab)

Full Changelog here

- Nextflow
Published by famosab about 1 year ago

vcftomaf - 1.1.0 - Amaranth Filly

Added - metromap (@FriederikeHanssen) - options to enable filtering by PASS via --filter, filtering was default in previous version (@famosab)

Fixed - Template update to 3.0.2, update modules & subworkflows (@famosab)

Thanks to @d4straub for reviews.

Full Changelog here

- Nextflow
Published by famosab over 1 year ago

vcftomaf - 1.0.0 - Plum Puppy

This is the initial release of a pipeline that can take VCF files and converts them to MAF format. Some further convenience features are available:

• Filtering the variant calls that have a PASS filter
• Filtering variants that are within regions provided by a bed file
• Liftover variants between genome builds

Some caveats: - Only VEP annotated VCF files are supported at the moment - This pipeline was tested on Strelka2, Manta, and Mutect2 VEP-annotated VCF files generated with nf-core/sarek

Full Changelog: https://github.com/qbic-pipelines/vcftomaf/commits/1.0.0

- Nextflow
Published by FriederikeHanssen about 2 years ago