pediatric_cancer_atlas_profiling - v0.0.1

An initial release for the pediatric cancer atlas image profiling project.

What's Changed

• Add main readme and platemaps by @jenna-tomkinson in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/1
• Add loaddata code and CSVs by @jenna-tomkinson in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/2
• Perform IC and extract QC metrics by @jenna-tomkinson in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/3
• Fix loaddata bug by @jenna-tomkinson in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/4
• Refactor IC and add image QC by @jenna-tomkinson in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/5
• Perform feature extraction and preprocessing by @jenna-tomkinson in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/6
• Rerun bulk normalization with U2O2 cell and generate single-cell UMAPs by @jenna-tomkinson in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/7
• Update scripts folder names and bash scripts by @jenna-tomkinson in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/10
• Update and confirm pe2loaddata works by @jenna-tomkinson in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/12
• Pairwise compare for optimization by @jaceybronte in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/11
• Adding boxplots to visualize optimization by @jaceybronte in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/14
• Generate QC report by @jenna-tomkinson in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/15
• Rerun and optimize QC by @jenna-tomkinson in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/16
• Update for hpc and fix issues by @jenna-tomkinson in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/19
• Explore COG prioritization by @gwaybio in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/18
• Add CITATION.cff file and supporting changes by @d33bs in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/20

New Contributors

• @jenna-tomkinson made their first contribution in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/1
• @jaceybronte made their first contribution in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/11
• @gwaybio made their first contribution in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/18
• @d33bs made their first contribution in https://github.com/WayScience/pediatriccanceratlas_profiling/pull/20

Full Changelog: https://github.com/WayScience/pediatriccanceratlas_profiling/commits/v0.0.1

- Jupyter Notebook
Published by d33bs 9 months ago