lephare - v0.1.16

What's Changed

• remove variable length array, replaced by std vectors by @johannct in https://github.com/lephare-photoz/lephare/pull/277
• 279 clarify auto adapt by @olivierilbert in https://github.com/lephare-photoz/lephare/pull/280

Full Changelog: https://github.com/lephare-photoz/lephare/compare/v0.1.15...v0.1.16

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Published by raphaelshirley about 1 year ago

lephare - v0.1.15

What's Changed

• 275 bug in rm discrepant bd by @olivierilbert in https://github.com/lephare-photoz/lephare/pull/276

Full Changelog: https://github.com/lephare-photoz/lephare/compare/v0.1.14...v0.1.15

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Published by raphaelshirley about 1 year ago

lephare - v0.1.14

What's Changed

• Converted every instance of macos-12 to macos-13 by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/225
• Bump mamba-org/setup-micromamba from 1 to 2 by @dependabot in https://github.com/lephare-photoz/lephare/pull/228
• Bump pre-commit-ci/lite-action from 1.0.3 to 1.1.0 by @dependabot in https://github.com/lephare-photoz/lephare/pull/226
• Bump pypa/cibuildwheel from 2.21.1 to 2.21.3 by @dependabot in https://github.com/lephare-photoz/lephare/pull/227
• Finalise test suite by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/224
• Issue/231/test fail with env set by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/232
• 211 simplify default compilation flags by @johannct in https://github.com/lephare-photoz/lephare/pull/237
• Added two options to process by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/236
• Fix Makefile for mac by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/238
• use HIGH_CHI2 uniformly by @johannct in https://github.com/lephare-photoz/lephare/pull/240
• Bump codecov/codecov-action from 4 to 5 by @dependabot in https://github.com/lephare-photoz/lephare/pull/244
• Bump slackapi/slack-github-action from 1 to 2 by @dependabot in https://github.com/lephare-photoz/lephare/pull/242
• Bump pypa/cibuildwheel from 2.21.3 to 2.22.0 by @dependabot in https://github.com/lephare-photoz/lephare/pull/243
• Documentation read through by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/219
• Trying to fix notebook download issue by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/246
• Update detailed.rst by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/247
• doc and unit testing for PDF credible interval computation by @johannct in https://github.com/lephare-photoz/lephare/pull/248
• improve generate pdf by @johannct in https://github.com/lephare-photoz/lephare/pull/249
• add stringtoobject function and fix the ascii header by @johannct in https://github.com/lephare-photoz/lephare/pull/250
• 198 fast last vector dimension being used by different threads might cause false cache sharing by @johannct in https://github.com/lephare-photoz/lephare/pull/251
• parallel work on #254 by @johannct in https://github.com/lephare-photoz/lephare/pull/256
• U/jct/solving valid lib arg issue by @johannct in https://github.com/lephare-photoz/lephare/pull/259
• Change the function validLib to improve the code efficiency. by @olivierilbert in https://github.com/lephare-photoz/lephare/pull/255
• Improve some headers and message display by @olivierilbert in https://github.com/lephare-photoz/lephare/pull/263
• Changes to include the possibility of a notebook computing the physical parameters by @olivierilbert in https://github.com/lephare-photoz/lephare/pull/264
• change validLib from onesource to PhotoZ to simplify its usage, and r… by @johannct in https://github.com/lephare-photoz/lephare/pull/265
• Fixing the broken main build by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/262
• Allow extrapolation of the templates also at higher redshift if the f… by @olivierilbert in https://github.com/lephare-photoz/lephare/pull/267
• Fix some warnings and errors when building doc by @johannct in https://github.com/lephare-photoz/lephare/pull/269
• 200 1+z grid needs to be thoroughly tested for correctness and consistency by @olivierilbert in https://github.com/lephare-photoz/lephare/pull/271

Full Changelog: https://github.com/lephare-photoz/lephare/compare/v0.1.13...v0.1.14

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Published by raphaelshirley over 1 year ago

lephare - v0.1.13

What's Changed

• Get PyPI install from source working by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/221

Full Changelog: https://github.com/lephare-photoz/lephare/compare/v0.1.12...v0.1.13

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Published by raphaelshirley over 1 year ago

lephare - v0.1.12

What's Changed

• minor fixes prior to release by @johannct in https://github.com/lephare-photoz/lephare/pull/187
• Bump pypa/cibuildwheel from 2.19.2 to 2.20.0 by @dependabot in https://github.com/lephare-photoz/lephare/pull/194
• Fix compilation with OpenMP disabled (single-threaded build) by @hdante in https://github.com/lephare-photoz/lephare/pull/195
• Avoid repeated indirect access to dictionaries and multi-dimensional vectors by @hdante in https://github.com/lephare-photoz/lephare/pull/201
• Support address sanitizer builds by @hdante in https://github.com/lephare-photoz/lephare/pull/207
• fix two buffer overflow risks by @johannct in https://github.com/lephare-photoz/lephare/pull/192
• 197 reduction operation being executed in parallel with read modify write operation in onesourcegeneratepdf by @hdante in https://github.com/lephare-photoz/lephare/pull/209
• Bump pypa/cibuildwheel from 2.20.0 to 2.21.1 by @dependabot in https://github.com/lephare-photoz/lephare/pull/212
• Bump pre-commit-ci/lite-action from 1.0.2 to 1.0.3 by @dependabot in https://github.com/lephare-photoz/lephare/pull/213
• Added 313 to PyPi publish by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/218

Full Changelog: https://github.com/lephare-photoz/lephare/compare/v0.1.11...v0.1.12

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Published by raphaelshirley over 1 year ago

lephare - v0.1.11

What's Changed

• Update process.py by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/184
• Update getting_started.rst by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/183
• Made all notebooks self contained by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/185
• fix a bug with creating the PDFmap for Mref out of the loc object by @johannct in https://github.com/lephare-photoz/lephare/pull/190
• Fix memory leak by @hdante in https://github.com/lephare-photoz/lephare/pull/193

New Contributors

• @hdante made their first contribution in https://github.com/lephare-photoz/lephare/pull/193

Full Changelog: https://github.com/lephare-photoz/lephare/compare/v0.1.10...v0.1.11

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Published by johannct almost 2 years ago

lephare - v0.1.10

What's Changed

• fix a bug in test_filter.py, and add a check to the test suite by @johannct in https://github.com/lephare-photoz/lephare/pull/110
• Bump pypa/cibuildwheel from 2.17.0 to 2.18.1 by @dependabot in https://github.com/lephare-photoz/lephare/pull/152
• Update LICENSE by @johannct in https://github.com/lephare-photoz/lephare/pull/151
• Fix broken build by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/160
• Add original documentation by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/113
• Fix bug on process context by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/155
• Include escape fraction for Lyman alpha by @olivierilbert in https://github.com/lephare-photoz/lephare/pull/171
• Update README.md by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/150
• Bump pypa/cibuildwheel from 2.18.1 to 2.19.1 by @dependabot in https://github.com/lephare-photoz/lephare/pull/172
• Improve documentation introduction by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/168
• 169 grabbing all the files from lephare data without the git structure by @johannct in https://github.com/lephare-photoz/lephare/pull/170
• Bump pypa/cibuildwheel from 2.19.1 to 2.19.2 by @dependabot in https://github.com/lephare-photoz/lephare/pull/176
• Fix PyPi build issue by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/182

New Contributors

• @dependabot made their first contribution in https://github.com/lephare-photoz/lephare/pull/152
• @olivierilbert made their first contribution in https://github.com/lephare-photoz/lephare/pull/171

Full Changelog: https://github.com/lephare-photoz/lephare/compare/v0.1.9...v0.1.10

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Published by raphaelshirley almost 2 years ago

lephare - v0.1.9

What's Changed

• Adding github action to run unit tests on osx operating systems. by @drewoldag in https://github.com/lephare-photoz/lephare/pull/141
• Update process.py by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/142
• Add sphinx, breathe, and exhale to dev requirements by @drewoldag in https://github.com/lephare-photoz/lephare/pull/145
• Update data_retrieval.py by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/146
• Update README.md by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/148
• Adding new default config by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/149
• Port over test_suite.sh by @OliviaLynn in https://github.com/lephare-photoz/lephare/pull/147

Full Changelog: https://github.com/lephare-photoz/lephare/compare/v0.1.8...v0.1.9

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Published by drewoldag about 2 years ago

lephare - v0.1.8

What's Changed

• Implementing a method to convert all configs to keywords. by @drewoldag in https://github.com/lephare-photoz/lephare/pull/137
• Add second filter to process test by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/140

Full Changelog: https://github.com/lephare-photoz/lephare/compare/v0.1.7...v0.1.8

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Published by raphaelshirley about 2 years ago

lephare - v0.1.7

What's Changed

• New function loadsedlist which puts seds and list in the work directory by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/129
• Update README.md by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/131
• Basic coverage of magsvc by @drewoldag in https://github.com/lephare-photoz/lephare/pull/128
• Adding tests for _pdf.py. by @drewoldag in https://github.com/lephare-photoz/lephare/pull/133
• Add zphota unit tests; remove some deprecated zphota code by @OliviaLynn in https://github.com/lephare-photoz/lephare/pull/134
• Changes to support converting between config representations by @drewoldag in https://github.com/lephare-photoz/lephare/pull/135

Full Changelog: https://github.com/lephare-photoz/lephare/compare/v0.1.6...v0.1.7

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Published by drewoldag about 2 years ago

lephare - v0.1.6

What's Changed

• Update README.md by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/116
• Specify __all__ list in modules to avoid importing numpy and matplotlib by @drewoldag in https://github.com/lephare-photoz/lephare/pull/117
• Issue/118/unit tests for spec by @drewoldag in https://github.com/lephare-photoz/lephare/pull/119
• Close test gap on runner.py by @drewoldag in https://github.com/lephare-photoz/lephare/pull/121
• Additional test coverage for Runner.config_parser by @drewoldag in https://github.com/lephare-photoz/lephare/pull/123
• Add to data manager unit tests; add removeemptyrun_directories by @OliviaLynn in https://github.com/lephare-photoz/lephare/pull/125
• Allow creation of a descriptive run directory by @drewoldag in https://github.com/lephare-photoz/lephare/pull/122
• Close test gap on filter.py by @drewoldag in https://github.com/lephare-photoz/lephare/pull/126

Full Changelog: https://github.com/lephare-photoz/lephare/compare/v0.1.5...v0.1.6

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Published by drewoldag about 2 years ago

lephare - v0.1.5

What's Changed

• Started work on inform stage and yaml config stuff by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/95
• Exposing python scripts for command line use by @drewoldag in https://github.com/lephare-photoz/lephare/pull/114
• Creating abstract photoz runner function by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/106

Full Changelog: https://github.com/lephare-photoz/lephare/compare/v0.1.4...v0.1.5

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Published by raphaelshirley about 2 years ago

lephare - v0.1.4

What's Changed

• Some edits to retrieval notebook by @OliviaLynn in https://github.com/lephare-photoz/lephare/pull/107
• Remove latest alias in publish-to-pypi.yml by @drewoldag in https://github.com/lephare-photoz/lephare/pull/108

Full Changelog: https://github.com/lephare-photoz/lephare/compare/v0.1.3...v0.1.3.1

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Published by drewoldag about 2 years ago

lephare - v0.1.3

What's Changed

• Adding limited retry logic when expected files are not found. by @drewoldag in https://github.com/lephare-photoz/lephare/pull/82
• Data retrieval unit tests by @OliviaLynn in https://github.com/lephare-photoz/lephare/pull/85
• Pre-created data dir are now created in cache (also, fix option to git clone full data set) by @OliviaLynn in https://github.com/lephare-photoz/lephare/pull/86
• Update README.md by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/89
• Try to speed up example notebooks by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/84
• Make sure that autoadapt offsets are printed in the output header when using python by @johannct in https://github.com/lephare-photoz/lephare/pull/57
• U/jct/minor stuff by @johannct in https://github.com/lephare-photoz/lephare/pull/91
• Fix circular imports, update pytest fixtures by @OliviaLynn in https://github.com/lephare-photoz/lephare/pull/92
• Code coverage reporting for C++ code by @drewoldag in https://github.com/lephare-photoz/lephare/pull/94
• Update compile-cpp.yml to use macos-12 by @drewoldag in https://github.com/lephare-photoz/lephare/pull/101
• Specify ubuntu image for hosted runner by @drewoldag in https://github.com/lephare-photoz/lephare/pull/103
• Changed default behaviour to only make a new run in the first instance by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/100
• Check registry file hash before downloading by @OliviaLynn in https://github.com/lephare-photoz/lephare/pull/93

Full Changelog: https://github.com/lephare-photoz/lephare/compare/v0.1.2...v0.1.3

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Published by drewoldag about 2 years ago

lephare - v0.1.2

What's Changed

• Added function to get data required by a given config by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/67
• Issue/41/update example notebooks by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/53
• Added gitlab docs to docs and updated readme by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/64
• Updates for transferring ownership of the data repo by @OliviaLynn in https://github.com/lephare-photoz/lephare/pull/68
• Issue/70/make all notebooks independent by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/71
• Revert "Delete build-documentation.yml" by @drewoldag in https://github.com/lephare-photoz/lephare/pull/69
• Changed kernels to default to attempt to fix sphinx kernel issue by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/72
• Restructuring DataManager and adding tests by @drewoldag in https://github.com/lephare-photoz/lephare/pull/63
• Indicate to RTD that it should clone pybind11. by @drewoldag in https://github.com/lephare-photoz/lephare/pull/81
• Ruff autofix run to make trivial changes to let it pass by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/80
• Rshirley/noissue/get registry on download by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/73

Full Changelog: https://github.com/lephare-photoz/lephare/compare/v0.1.1...v0.1.2

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Published by raphaelshirley about 2 years ago

lephare - v0.1.1

What's Changed

• Set default environment variables if they are not set by @raphaelshirley in https://github.com/lephare-photoz/lephare/pull/50
• Data retrieval by @OliviaLynn in https://github.com/lephare-photoz/lephare/pull/49
• Updating project name in setup.py and pyproject.toml. by @drewoldag in https://github.com/lephare-photoz/lephare/pull/56
• Updating the badge links in top level README.txt by @drewoldag in https://github.com/lephare-photoz/lephare/pull/58
• Update README.md by @drewoldag in https://github.com/lephare-photoz/lephare/pull/61

New Contributors

• @OliviaLynn made their first contribution in https://github.com/lephare-photoz/lephare/pull/49

Full Changelog: https://github.com/lephare-photoz/lephare/compare/v0.1...v0.1.1

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Published by drewoldag about 2 years ago

lephare - v0.1

What's Changed

• Moving C++ code to new repo by @drewoldag in https://github.com/lincc-frameworks/lephare-dev/pull/1
• Allow code to compile with Apple's Clang compiler by @jeremykubica in https://github.com/lincc-frameworks/lephare-dev/pull/3
• porting some very recent cleanups and fixes from the gitlab repo by @johannct in https://github.com/lincc-frameworks/lephare-dev/pull/4
• Applying Google C++ styling using clang-format in pre-commit hook by @drewoldag in https://github.com/lincc-frameworks/lephare-dev/pull/5
• Commenting out pre-commit hooks that are not currently required by @drewoldag in https://github.com/lincc-frameworks/lephare-dev/pull/14
• Create github action to build c++ code by @drewoldag in https://github.com/lincc-frameworks/lephare-dev/pull/16
• Updating PPT, adding support for Python 3.9-3.12 by @drewoldag in https://github.com/lincc-frameworks/lephare-dev/pull/17
• Move the notebooks into the lephare-dev environment by @jeremykubica in https://github.com/lincc-frameworks/lephare-dev/pull/20
• Moving Python code over by @drewoldag in https://github.com/lincc-frameworks/lephare-dev/pull/18
• Move over first batch of tests by @jeremykubica in https://github.com/lincc-frameworks/lephare-dev/pull/22
• add warning in readthedocs by @johannct in https://github.com/lincc-frameworks/lephare-dev/pull/25
• Rename the notebooks by @jeremykubica in https://github.com/lincc-frameworks/lephare-dev/pull/24
• Apply ruff formatting to python files in the example directory by @jeremykubica in https://github.com/lincc-frameworks/lephare-dev/pull/23
• Porting test_keyword and COSMOS.para to the tests/data directory. by @drewoldag in https://github.com/lincc-frameworks/lephare-dev/pull/26
• Convert tests to pytest by @jeremykubica in https://github.com/lincc-frameworks/lephare-dev/pull/27
• Reduce the number of errors in the precommit. by @jeremykubica in https://github.com/lincc-frameworks/lephare-dev/pull/29
• Update README.md by @raphaelshirley in https://github.com/lincc-frameworks/lephare-dev/pull/28
• Fix broken github actions by @jeremykubica in https://github.com/lincc-frameworks/lephare-dev/pull/31
• Fix a bunch of the precommit linting errors by @jeremykubica in https://github.com/lincc-frameworks/lephare-dev/pull/30
• Combining Doxygen & Sphinx to render C and Python autoapi together in docs by @drewoldag in https://github.com/lincc-frameworks/lephare-dev/pull/33
• Update README.md by @drewoldag in https://github.com/lincc-frameworks/lephare-dev/pull/37
• Basic docstrings for public python classes and functions. by @raphaelshirley in https://github.com/lincc-frameworks/lephare-dev/pull/39
• Small updates to notebooks for new repo/directory structure by @drewoldag in https://github.com/lincc-frameworks/lephare-dev/pull/40
• Adding workflow to publish linux build to PyPI by @drewoldag in https://github.com/lincc-frameworks/lephare-dev/pull/42
• Issue/46/fix float vs double issue in globals by @raphaelshirley in https://github.com/lincc-frameworks/lephare-dev/pull/47
• Mac builds for distribution to PyPI by @drewoldag in https://github.com/lincc-frameworks/lephare-dev/pull/44

New Contributors

• @drewoldag made their first contribution in https://github.com/lincc-frameworks/lephare-dev/pull/1
• @jeremykubica made their first contribution in https://github.com/lincc-frameworks/lephare-dev/pull/3
• @johannct made their first contribution in https://github.com/lincc-frameworks/lephare-dev/pull/4
• @raphaelshirley made their first contribution in https://github.com/lincc-frameworks/lephare-dev/pull/28

Full Changelog: https://github.com/lincc-frameworks/lephare-dev/commits/v0.1

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Published by drewoldag about 2 years ago