TransitionsInTimeseries.jl

TransitionsInTimeseries.jl: A performant, extensible and reliable software for reproducible detection and prediction of transitions in timeseries - Published in JOSS (2024)

https://github.com/juliadynamics/transitionsintimeseries.jl

Science Score: 100.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
    Found 4 DOI reference(s) in README and JOSS metadata
  • Academic publication links
    Links to: joss.theoj.org
  • Committers with academic emails
    1 of 5 committers (20.0%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
    Published in Journal of Open Source Software

Keywords

change-point-detection critical-slowing-down critical-transitions early-warning-signals hacktoberfest nonlinear-dynamics nonlinear-timeseries-analysis resilience-loss tipping-points

Keywords from Contributors

surrogate graphics standardization
Last synced: 6 months ago · JSON representation ·

Repository

Transition Indicators / Early Warning Signals / Regime Shifts / Change Point Detection

Basic Info
  • Host: GitHub
  • Owner: JuliaDynamics
  • License: mit
  • Language: Julia
  • Default Branch: main
  • Homepage:
  • Size: 45.1 MB
Statistics
  • Stars: 23
  • Watchers: 3
  • Forks: 7
  • Open Issues: 21
  • Releases: 6
Topics
change-point-detection critical-slowing-down critical-transitions early-warning-signals hacktoberfest nonlinear-dynamics nonlinear-timeseries-analysis resilience-loss tipping-points
Created over 3 years ago · Last pushed 9 months ago
Metadata Files
Readme Changelog License Citation

README.md

TransitionsInTimeseries.jl

CI codecov Package Downloads DOI

TransitionsInTimeseries.jl is a free and open-source software to easily analyse transitions within timeseries in a reproducible, performant, extensible and reliable way. In contrast to other existing software with similar target application, TransitionsInTimeseries.jl defines a generic interface for how to find transitions and how to test for significance. Within this interface, it is easy to expand the software in three orthogonal ways:

  1. Provide the analysis pipelines with new indicators, which can be either self-written or imported from other packages. In particular, the latter offers thousands of metrics that can indicate transitions right out of the box.
  2. Add new analysis pipelines for finding transitions.
  3. Add new ways for significance testing.

TransitionsInTimeseries is a registered Julia package and can be installed by running: ] add TransitionsInTimeseries

All further information is provided in the documentation, which you can either find online or build locally by running the docs/make.jl file.

Alternative names for this package could have been: Early Warning Signals / Resilience Indicators / Regime-Shift Identifiers / Change-Point Detectors, or however else you want to call them!

Owner

  • Name: JuliaDynamics
  • Login: JuliaDynamics
  • Kind: organization

A Julia-based software organization for dynamical systems, nonlinear dynamics, complex systems and the complexities of the scientific life

JOSS Publication

TransitionsInTimeseries.jl: A performant, extensible and reliable software for reproducible detection and prediction of transitions in timeseries
Published
July 13, 2024
Volume 9, Issue 99, Page 6464
Authors
Jan Swierczek-Jereczek ORCID
Department of Earth Physics and Astrophysics, Complutense University of Madrid.
George Datseris ORCID
Department of Mathematics and Statistics, University of Exeter.
Editor
Oskar Laverny ORCID
Tags
nonlinear dynamics timeseries analysis change point detection resilience loss critical slowing down early warning signals

Citation (CITATION.cff)

cff-version: "1.2.0"
authors:
- family-names: Swierczek-Jereczek
  given-names: Jan
  orcid: "https://orcid.org/0000-0003-2213-0423"
- family-names: Datseris
  given-names: George
  orcid: "https://orcid.org/0000-0002-6427-2385"
doi: 10.5281/zenodo.12731309
message: If you use this software, please cite our article in the
  Journal of Open Source Software.
preferred-citation:
  authors:
  - family-names: Swierczek-Jereczek
    given-names: Jan
    orcid: "https://orcid.org/0000-0003-2213-0423"
  - family-names: Datseris
    given-names: George
    orcid: "https://orcid.org/0000-0002-6427-2385"
  date-published: 2024-07-13
  doi: 10.21105/joss.06464
  issn: 2475-9066
  issue: 99
  journal: Journal of Open Source Software
  publisher:
    name: Open Journals
  start: 6464
  title: "TransitionsInTimeseries.jl: A performant, extensible and
    reliable software for reproducible detection and prediction of
    transitions in timeseries"
  type: article
  url: "https://joss.theoj.org/papers/10.21105/joss.06464"
  volume: 9
title: "TransitionsInTimeseries.jl: A performant, extensible and
  reliable software for reproducible detection and prediction of
  transitions in timeseries"

GitHub Events

Total
  • Create event: 3
  • Issues event: 1
  • Release event: 2
  • Watch event: 2
  • Delete event: 2
  • Issue comment event: 1
  • Push event: 17
  • Pull request review event: 1
  • Pull request event: 6
  • Fork event: 1
Last Year
  • Create event: 3
  • Issues event: 1
  • Release event: 2
  • Watch event: 2
  • Delete event: 2
  • Issue comment event: 1
  • Push event: 17
  • Pull request review event: 1
  • Pull request event: 6
  • Fork event: 1

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 102
  • Total Committers: 5
  • Avg Commits per committer: 20.4
  • Development Distribution Score (DDS): 0.441
Past Year
  • Commits: 5
  • Committers: 2
  • Avg Commits per committer: 2.5
  • Development Distribution Score (DDS): 0.2
Top Committers
Name Email Commits
Datseris d****e@g****m 57
Jan Swierczek-Jereczek 4****k 38
github-actions[bot] 4****] 5
Inga Kottlarz 6****z 1
Felix Cremer f****r@b****e 1
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 41
  • Total pull requests: 49
  • Average time to close issues: 4 months
  • Average time to close pull requests: 5 days
  • Total issue authors: 5
  • Total pull request authors: 5
  • Average comments per issue: 1.29
  • Average comments per pull request: 2.02
  • Merged pull requests: 44
  • Bot issues: 0
  • Bot pull requests: 7
Past Year
  • Issues: 1
  • Pull requests: 5
  • Average time to close issues: N/A
  • Average time to close pull requests: about 1 hour
  • Issue authors: 1
  • Pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 5
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • Datseris (24)
  • JanJereczek (9)
  • felixcremer (4)
  • KristofferC (1)
Pull Request Authors
  • JanJereczek (33)
  • Datseris (17)
  • github-actions[bot] (7)
  • ikottlarz (2)
  • felixcremer (2)
Top Labels
Issue Labels
new indicator (14) help wanted (4) documentation (4) design (4) performance (2) new IndicatorsChangesConfig (2) enhancement (2) needs more info (1) good first issue (1) tests (1) simplification (1) example (1) hard (1) early warning (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • julia 2 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 4
juliahub.com: TransitionsInTimeseries

Transition Indicators / Early Warning Signals / Regime Shifts / Change Point Detection

  • Versions: 4
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 2 Total
Rankings
Dependent repos count: 10.1%
Average: 25.3%
Dependent packages count: 40.4%
Last synced: 6 months ago

Dependencies

.github/workflows/CompatHelper.yml actions
  • julia-actions/setup-julia latest composite
.github/workflows/TagBot.yml actions
  • JuliaRegistries/TagBot v1.10.0 composite
.github/workflows/ci.yml actions
  • actions/cache v1 composite
  • actions/checkout v2 composite
  • julia-actions/julia-buildpkg v1 composite
  • julia-actions/julia-runtest v1 composite
  • julia-actions/setup-julia v1 composite
  • styfle/cancel-workflow-action 0.6.0 composite