Releases | Open Source Science

eprinttools - v1.3.11

updated module depencies per issue #68. Added another report showing all non published and non submitted status and eprintid.

Full Changelog: https://github.com/caltechlibrary/eprinttools/compare/v1.3.10...v1.3.11

- Go
Published by rsdoiel 12 months ago

What's Changed

build(deps): bump golang.org/x/crypto from 0.31.0 to 0.35.0 by @dependabot in https://github.com/caltechlibrary/eprinttools/pull/68

Full Changelog: https://github.com/caltechlibrary/eprinttools/compare/v1.3.9...v1.3.10

- Go
Published by rsdoiel 12 months ago

eprinttools - maintenance release

updated module depencies per issue #67.

What's Changed

build(deps): bump golang.org/x/crypto from 0.20.0 to 0.31.0 by @dependabot in https://github.com/caltechlibrary/eprinttools/pull/67

Full Changelog: https://github.com/caltechlibrary/eprinttools/compare/v1.3.8...v1.3.9

- Go
Published by rsdoiel over 1 year ago

eprinttools - Minor update to configuration for ep3apid

This release includes the option to pass a YAML file (in additional to the JSON version) of a configuration to ep3apid. The YAML support was added to make it easier to create configuration scripts for ep3apid.

- Go
Published by rsdoiel almost 2 years ago

eprinttools - Maintenance release

Updated to Go 1.22 and various package updates.

- Go
Published by rsdoiel about 2 years ago

eprinttools - Dependency updates

v1.3.6 now requires simplified package v0.0.21 do to integration of ROR into Funder struct.

- Go
Published by rsdoiel over 2 years ago

eprinttools - Maintenance release

This release brings uses the simplified package v0.0.19 in the crosswalk functionality.

- Go
Published by rsdoiel over 2 years ago

eprinttools - Bug fixes, crossrefapi update

This release includes some bug fixes and now uses crossrefapi v1.0.4. Article numbers should map correctly from CrossRef.

- Go
Published by rsdoiel almost 3 years ago

eprinttools - Documentation cleanup, fixed version bug in doi2eprintxml

This release is primarily documentation improvements to explain the new installation procedure for macOS and Linux. A few bugs were fixed along the way.

Full Changelog: https://github.com/caltechlibrary/eprinttools/compare/v1.3.0...v1.3.1

- Go
Published by rsdoiel almost 3 years ago

eprinttools - Simplified records now separate package

This minor release reflects splitting the simple record handling into it's own package. When you use the -json and -simple options in doi2eprintxml you now get different record structures, the first is a JSON representation of the EPrint XML and the latter reflects the simplified record model shared with the irdmtools package and tools. EPrinttools now depends on simplified v0.0.3 or better to compile.

Full Changelog: https://github.com/caltechlibrary/eprinttools/compare/v1.2.5...v1.3.0

- Go
Published by rsdoiel almost 3 years ago

eprinttools - identifier handling and role mapping

This release changes are focused on improvement of the simple record model and crosswalk for migrating content from EPrints to Invenio-RDM. This has involved some minor mapping of values as URI to simple strings and adjust the model to more closely reflect what can be imported directly into Invenio-RDM.

- Go
Published by rsdoiel about 3 years ago

eprinttools - refining simple records

This release features changes around the simple record JSON support. The model is being brought closer to that which can be easily imported into InvenioRDM with minor fixups.

- Go
Published by rsdoiel about 3 years ago

eprinttools - simple record improvements

This release focus on fixes for migrating EPrint records to Invenio-RDM using an intermediate "simple" record format.

Full Changelog: https://github.com/caltechlibrary/eprinttools/compare/v1.2.2...v1.2.3

- Go
Published by rsdoiel about 3 years ago

eprinttools - Bug fixes, crosswalk signature changes

This release focuses on cleaning and allowing for migration of the simplified (largely Invenio-RDM 11 compatible) data model into it own package. The crosswalk function's signature has changed as a result of that eventual migration. The simplified record model to support the current record structure of Invenio-RDM 11 as much as is clear.

- Go
Published by rsdoiel about 3 years ago

eprinttools - build cleanup and documentation

This release primarily cleans up the build process and updates the documentation adding support for generating man pages.

- Go
Published by rsdoiel over 3 years ago

eprinttools - Enhanced extended API

This release features a minor enhancement to the EP3 extended API. In the JSON output for an EPrint record it now includes two additional fields if available, "depositedon" and "depositedby" if user information is available.

eputil option to talk to the extended API show retrieving both EPrint XML and JSON in the help. If the -json option is included with eputil when accessing the extended API then the content returned should be in JSON and if not present it'll be EPrint XML when retrieving individual EPrint records.

- Go
Published by rsdoiel over 3 years ago

eprinttools - Bug fixes

doi2eprintxml.exe running on Windows 10 was generating duplicate IDNumber/OfficialURL values. Might be how the time library functions slightly differently under Windows versus Unix. The bug report was DR-441. I added an incremented value to generating the IDNumber attribute. This seems to solve the problem for now. Using an actual UUID would make more sense in long run if problem persists.

- Go
Published by rsdoiel over 3 years ago

eprinttools - Regression bug fix

This release fixed a regression in EPrint ID Number handling introduce after v1.1.4. It also removes the snap/snapacraft.xml file since EPrint Tools doesn't fit the snapcraft deployment model very well.

- Go
Published by rsdoiel over 3 years ago

eprinttools - Added snap support

This release adds support for building snaps of EPrintTools.

What's Changed

Added snap definition to next by @rsdoiel in https://github.com/caltechlibrary/eprinttools/pull/61
Next, snap support by @rsdoiel in https://github.com/caltechlibrary/eprinttools/pull/62

Full Changelog: https://github.com/caltechlibrary/eprinttools/compare/1.1.6...1.1.7

- Go
Published by rsdoiel almost 4 years ago

eprinttools - Updated eputil cli

The eputil cli has been updated. It now supports some configuration via environment. See eputil -h for details. Added a demo Python scripts called pseudo-baggit.py that shows how you might embed eputil in a Python program for processing EPrints metadata.

- Go
Published by rsdoiel almost 4 years ago

eprinttools - Bug fixes for ep3apid import functionality

This release fixes bugs in ep3apid import. Import should now populate the reviewer field in the eprint table.

What's Changed

Next by @rsdoiel in https://github.com/caltechlibrary/eprinttools/pull/60

Full Changelog: https://github.com/caltechlibrary/eprinttools/compare/1.1.4...1.1.5

- Go
Published by rsdoiel about 4 years ago

eprinttools - Bug fixes in doi2eprintxml parameter handling

Fixed parameter handling that got mangled when switching back to flag for processing parameters.

Full Changelog: https://github.com/caltechlibrary/eprinttools/compare/1.1.3...1.1.4

- Go
Published by rsdoiel about 4 years ago

eprinttools - 1.1.3 is a bug fix release

This is primarily a bug fix release related to ep3apid.

What's Changed

Merge 1.1.3-next into proposed release 1.1.3 by @rsdoiel in https://github.com/caltechlibrary/eprinttools/pull/57

Full Changelog: https://github.com/caltechlibrary/eprinttools/compare/1.1.2...1.1.3

- Go
Published by rsdoiel about 4 years ago

eprinttools - 1.1.2 bug fixes

This release fixes a bug when generating the EPrint idnumber and officialurl for doi2eprintxml.

Full Changelog: https://github.com/caltechlibrary/eprinttools/compare/1.1.1...1.1.2

- Go
Published by rsdoiel about 4 years ago

eprinttools - 1.1.1 Bug fixes, more configuration in settings.json and more end points in ep3apid

This release is a combination of bug fixes and minor enhancement to ep3apid and EPrint XML generation. Included in 1.1.1 is a sketch of a Python client for working with ep3apid.

Full Changelog: https://github.com/caltechlibrary/eprinttools/compare/1.1.0...1.1.1

- Go
Published by rsdoiel over 4 years ago

eprinttools - More bug fixes in ep3piad

This releases fixed a bug in how timestamps were encoded in ranged end points in ep3apid. This was identified through testing with feeds' harvesting.

Full Changelog: https://github.com/caltechlibrary/eprinttools/compare/1.1.0...1.1.1-rc5

- Go
Published by rsdoiel over 4 years ago

eprinttools - 1.1.1 Release Candidate 4: Bug fixes, added "strip_tags" behavior

Close issue #47. The clsrules rule set and settings.json now supports a "strip_tags" rule which will strip HTML/XML tags from an imported Abstract. This includes imports from ep3apid and also works in doi2eprintxml.

- Go
Published by rsdoiel over 4 years ago

eprinttools - 1.1.1 Release Candidate 3: Bug fixes, added end points

Bug fixes, issues 43 (revisited), 44, 45, 46, 48, 49 closed.

Added /{REPO_ID}/is-public/{EPRINT_ID} end point to check if an eprint record "is public" (i.e. is eprintstatus = "archive" and metadatavisibility = "show").

For key lists added ?eprint_status=... option support in the ep3apid service.

The following fields in configuration were moved from the outer scope to per repository scope -- "defaultofficialurl", "defaultcollection", "defaultrights", "defaultrefereed", "defaultstatus".

Full Changelog: https://github.com/caltechlibrary/eprinttools/compare/1.1.0...1.1.1-rc3

- Go
Published by rsdoiel over 4 years ago

eprinttools - 1.1.1 Release Candidate 2

Primarily Bug fixes from 1.1.1-rc1 (release) and 1.1.1-next branch. The eputil command line tool now can function as a client to the Extended EPrints API service.

Full Changelog: https://github.com/caltechlibrary/eprinttools/compare/1.1.0...1.1.1-rc2

- Go
Published by rsdoiel over 4 years ago

eprinttools - 1.1.1 release candidate 1

Mostly bug fixes. Added user end points, eprint-import requires a user id for sending the imported eprint to the correct buffer. Sets eprint_status to buffer. Fixed some alignment issues in data, added more tests.

Full Changelog: https://github.com/caltechlibrary/eprinttools/compare/1.1.0...1.1.1-rc1

- Go
Published by rsdoiel over 4 years ago

eprinttools - Extended API release

This is a significant update to the internal datastructures used in EPrinttools. Also present is a new ep3apid program which implements a localhost based web service for interacting with EPrints repositories via MySQL queries. Many bugs were fixed. In the doi2eprintxml tool the "clsrules" rule set can be used collectively or you can enable, disabled specific rules in that set.

- Go
Published by rsdoiel over 4 years ago

eprinttools - Prep for 1.1.0 release canidate 2

Fixed issues 34 through 37 identified in release 1.1.0-rc1.

- Go
Published by rsdoiel over 4 years ago

eprinttools - Prep for 1.1.0 release candidate 1

This release features read/write support for importing EPrint XML via the ep3apid service. Significant changes to eprint3x.go and the defined data structures within it have been made in order to support imports into all of Caltech Library's EPrints repositories. In the doi2eprintxml tool you can select all of Caltech Library's import rules or select the rules individually. This feature was added for integration into Acacia.

- Go
Published by rsdoiel over 4 years ago

eprinttools - Simplified Project Release

Introduced a web service called ep3apid which can be run from the command line or setup to run from systemd (Debian Linux) or launchd (macOS). It provides a local host web service for quick key list retrieval by talking directly to the EPrints MySQL database(s).

Introduced a "simplified" JSON model based on DataCite and Invenio 3. This is supported in eputil, epfmt using command line options and is the default JSON record output for ep3apid.

Depreciated eprintxml2json, superceded by epfmt.

By default clsrules now require the command line option to be applied.

Removed Python experiments from this repository

- Go
Published by rsdoiel over 4 years ago

eprinttools - Stable release

eprinttools has stability, this is a 1.0.0 release to reflect that.

- Go
Published by rsdoiel over 4 years ago

eprinttools - go1.16 support

Added go1.16 module support. Dropped support for ep cli and direct integration into dataset collections.

- Go
Published by rsdoiel about 5 years ago

eprinttools - New aggregators for eprinttools Python module

Release Notes v0.1.7

Improved Aggregators, released via PyPI
Currently not harvesting digital documents in dataset collection

- Go
Published by rsdoiel over 5 years ago

eprinttools - PyPI release with publisher bug fixes

This is a bugs fix release for the eprinttools module. The module eprinttools.eprints3x and eprinttools.eprintviews are now just eprinttools. Fixed a missing set of tests for publishing to S3 buckets.

- Go
Published by rsdoiel over 5 years ago

eprinttools - PyPI release

This is the first release of eprinttools (eprinttools-0.1.5.tar.gz) Python module on PyPi.

- Go
Published by rsdoiel over 5 years ago

eprinttools - Python modules for EPrints public view cloning

This first release that features an eprinttools Python 3 module for creating public static page versions of an EPrints repository suitable to host on s3 and CloudFront at AWS (or similar platforms).

The goal of these additions is to allow Caltech Library to continue to use EPrints as a curation tool but allow us greater flexibility and integration with our Library and Archive's web presence.

This release includes both Python package and Go language package and cli.

- Go
Published by rsdoiel over 5 years ago

eprinttools - Metadata improvements

The .primary_object field generated when you harvest EPrints XML and render it as JSON now includes a filesize if available.

- Go
Published by rsdoiel over 5 years ago

eprinttools - Improved Python 3 module eprints3x

This release sees improvements to the Python module for working with EPrints rest api. This includes harvesting recently modified and full repository. The recently modified filters by last mod date. Two harvester examples, demo-harvester-recent.py and demo-harvester-full.py. Minor bug fixes. Updated ROADMAP.md.

- Go
Published by rsdoiel over 5 years ago

eprinttools - Harvester demo, eprints3x python module improvements, bug fix

This release includes a bug fix in populating the primary object the EPrint record points out. Also included os the eprints3x python module which supports harvesting an EPrints record and related documents into dataset. A demo of this module is included as "demo-harvester.py".

- Go
Published by rsdoiel over 5 years ago

eprinttools - Code reduction release

Depreciated the ep cli. Removed harvest module and dependency on dataset collections. Added an example eprints3x Python module and example harvester.py script for replacing ep usage. Merged Golang github.com/caltechlibrary/rc package into eprinttools project. Removed Golang harvester code.

Added a ROADMAP.md file and RELEASE-NOTES.md to track changes in.

- Go
Published by rsdoiel over 5 years ago

eprinttools - Revisions to our Caltech Library EPrint XML rules

This release includes previous bug fixes as well as changes in how authors are handled in rendered EPrints XML. In previous versions we only imported up to 30 authors or didn't import any. The doi2eprintxml tool now import all authors as listed by CrossRef or DataCite when we query their API. This is per changes in behavior discussed at 2020-02-18 Tools Incubator meeting.

- Go
Published by rsdoiel about 6 years ago

eprinttools - DR-141 bug fix

Compiled eprinttools using Go 1.113, based on dataset v0.1.2, added tests to confirm DR-59 and DR-141 problem DOI resolve properly.

- Go
Published by rsdoiel about 6 years ago

eprinttools - Updated to support dataset v0.1.1

This is release is internal changes to be able to compile against dataset v0.1.1.

- Go
Published by rsdoiel over 6 years ago

eprinttools - Improved synthetic fields

Refine synthetic field generation in JSON output from eprinttools.

- Go
Published by rsdoiel over 6 years ago

eprinttools - Synthetic fields release

This release includes some JSON attribute rendering based on extracting some of the deeper data from an EPrint XML object. The synthetic fields are primary_object and related_objects which can be used to easily build direct links to the EPrint record's primary object (e.g. Article PDF) and related materials (e.g. figures and other supplemental objects).

- Go
Published by rsdoiel over 6 years ago

eprinttools - Bug fix release, issue #27

Fixed problem when using the -export-with-docs option in ep cli. Documents are now exported to the versioned dataset directory and are not zero bytes. This release is compiled against dataset v0.0.67 which contains part of the fix.

- Go
Published by rsdoiel over 6 years ago

eprinttools - Bug fix release

Fixed issue #26 and compiled against libdataset.

- Go
Published by rsdoiel almost 7 years ago

eprinttools - Pre-release tracking dataset v0.0.65

This release is tracking the dataset v0.0.65 and the only changes is in the compile targets.

- Go
Published by rsdoiel almost 7 years ago

eprinttools - Pre-release tracking dataset v0.0.64

This release tracks release the dataset v0.0.64. Change is compilation against dataset v0.0.64 for binary files.

- Go
Published by rsdoiel almost 7 years ago

eprinttools - JSON attribute name correction.

The JSON output of EPrint records now uses the attribute .pmcid replacing .pmc_id in prior releases. This makes the attribute name match common usage (e.g. https://www.ncbi.nlm.nih.gov/pmc/pmctopmid/). This release is compiled against v0.0.63 pre-release for v1 of dataset.

- Go
Published by rsdoiel almost 7 years ago

eprinttools - Pre-release compiled against dataset v0.0.63

This is a version eprinttools compiled against dataset v0.0.63 pre-release to dataset v1

- Go
Published by rsdoiel almost 7 years ago

eprinttools - Pre-release compiled against dataset v0.0.62

This is a pre-release of eprinttools compiled against dataset v0.0.62 (also a pre-release). This is for testing while we wait for release v1.0.0 of dataset.

- Go
Published by rsdoiel almost 7 years ago

eprinttools - Depreciated libeprint3 and python support

In this release we have bug fixes from v0.0.43 as well as removal of Python module code and the libeprint3 shared library support. These have been replaced by the ames project.

- Go
Published by rsdoiel almost 7 years ago

eprinttools - DR-46 changes

Volume and Number (issue number) have leading zeros trimmed.

- Go
Published by rsdoiel about 7 years ago

eprinttools - Fix Bug DR-59, crashing doi2eprintxml

An additional check for initialization needed in clsrules module at line 100 for referencing and cleaning up the Creator.Items[] list. This bug impacted in doi2eprintxml.

- Go
Published by rsdoiel about 7 years ago

eprinttools - Another pruning fix

When ep was run with certain export options it would fail to prune stale records that changed status in a harvest. Pruning should now happen when exporting all keys, recent keys, explicit key lists.

- Go
Published by rsdoiel about 7 years ago

eprinttools - Fix harvesting behavior

The sub-module harvest/harvest.go should prune when we get a WARNING on harvesting an EPrint if that item is in the associated dataset collection, otherwise skip. The is a change in behavior as an item previously harvested that later change status would not get pruned.

- Go
Published by rsdoiel about 7 years ago

eprinttools - Minor cli changes for the ep utility

This is a minor behavior change for the ep tool's command line. The -export-keys option will now read from standard in (one line per id) for the eprint id to export. To use this option specify the import key as "-". E.g.

ep -dataset=test.ds -api=https://eprints.example.edu -export-keys "-" < keylist.txt

- Go
Published by rsdoiel about 7 years ago

eprinttools - Improved password handling for eputil command

This release sees a change in the way the command line options for passwords works in the eputil command. When you use -password it'll trigger a prompt for the password rather than read it from the command line. The prompt uses the golang/x/crypto/ssh/terminal package implementation of terminal.ReadPassword().

- Go
Published by rsdoiel about 7 years ago

eprinttools - Fixed stray debug line

This release removes a stray debug line left on the code for eputil which cause the output to be corrupted JSON.

- Go
Published by rsdoiel about 7 years ago

eprinttools - eputil cli update, Fixing issue #20

This release fixed issue #20 with the eputil password handling when using a URL with username and password. This release also includes epfmt which will validate/convert to and from EPrintXML and eprinttools' JSON rendering of EPrintXML.

- Go
Published by rsdoiel about 7 years ago

eprinttools - epfmt bug fixes

Improved JSON unmarshal support for various odd items related fields. Add a test Bash script for epfmt. Requires a URL to test (non-destructive) against a target EPrints repository with REST API enabled. Requires epfmt, jsonrange and awk to run test.

- Go
Published by rsdoiel about 7 years ago

eprinttools - epfmt introduction

In this release a new command line tool called epfmt has been introduced to make it easy to convert EPrint XML to/from JSON as well as pretty print both the XML and JSON. This will make it easier to transform EPrint exported XML in scripts written in Bash or Python.

- Go
Published by rsdoiel about 7 years ago

eprinttools - Bug fix for DR-48 issue

The ep harvesting tool should skip records identified with EPrint XML of eprint_status equal to buffer (in addition to 'deletion' and 'inbox'). This release updates the harvester to respect that status and show a warning when skipping the harvest of those records.