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cytobrowser

CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annotation of very large microscopy images.

https://github.com/mida-group/cytobrowser

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic links in README
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (1.6%) to scientific vocabulary

Keywords

annotation-layer annotations cytology cytopathology deep-learning javascript machine-learning microscopy-images node-js nodejs visualization webapp whole-slide-imaging wsi
Last synced: 6 months ago · JSON representation

Repository

CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annotation of very large microscopy images.

Basic Info
  • Host: GitHub
  • Owner: MIDA-group
  • License: gpl-3.0
  • Language: JavaScript
  • Default Branch: master
  • Homepage:
  • Size: 4.73 MB
Statistics
  • Stars: 19
  • Watchers: 1
  • Forks: 8
  • Open Issues: 89
  • Releases: 14
Topics
annotation-layer annotations cytology cytopathology deep-learning javascript machine-learning microscopy-images node-js nodejs visualization webapp whole-slide-imaging wsi
Created over 5 years ago · Last pushed 7 months ago
Metadata Files
Readme Contributing License Zenodo

Owner

  • Name: Methods for Image Data Analysis - MIDA
  • Login: MIDA-group
  • Kind: organization

MIDA is a research group in Computerized Image Analysis at Uppsala University, Sweden

GitHub Events

Total
  • Create event: 17
  • Issues event: 6
  • Release event: 2
  • Watch event: 3
  • Delete event: 18
  • Member event: 1
  • Issue comment event: 9
  • Push event: 76
  • Pull request event: 23
  • Pull request review event: 4
  • Fork event: 1
Last Year
  • Create event: 17
  • Issues event: 6
  • Release event: 2
  • Watch event: 3
  • Delete event: 18
  • Member event: 1
  • Issue comment event: 9
  • Push event: 76
  • Pull request event: 23
  • Pull request review event: 4
  • Fork event: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 89
  • Total pull requests: 50
  • Average time to close issues: 8 months
  • Average time to close pull requests: 11 days
  • Total issue authors: 2
  • Total pull request authors: 3
  • Average comments per issue: 0.43
  • Average comments per pull request: 0.34
  • Merged pull requests: 35
  • Bot issues: 0
  • Bot pull requests: 11
Past Year
  • Issues: 6
  • Pull requests: 16
  • Average time to close issues: 2 days
  • Average time to close pull requests: 8 days
  • Issue authors: 1
  • Pull request authors: 2
  • Average comments per issue: 0.33
  • Average comments per pull request: 0.44
  • Merged pull requests: 8
  • Bot issues: 0
  • Bot pull requests: 7
View more stats
Top Authors
Issue Authors
  • joakimlindblad (87)
  • crydell (1)
Pull Request Authors
  • joakimlindblad (38)
  • dependabot[bot] (15)
  • MarcelloVendruscolo (3)
Top Labels
Issue Labels
enhancement (20) bug (19) low priority (17) good first issue (3) high priority (3)
Pull Request Labels
dependencies (15)

Packages

  • Total packages: 1
  • Total downloads:
    • npm 103 last-month
  • Total dependent packages: 1
  • Total dependent repositories: 0
  • Total versions: 8
  • Total maintainers: 1
npmjs.org: cytobrowser

CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annotation of very large microscopy images.

  • Versions: 8
  • Dependent Packages: 1
  • Dependent Repositories: 0
  • Downloads: 103 Last month
Rankings
Forks count: 10.8%
Stargazers count: 12.5%
Dependent packages count: 16.2%
Average: 18.5%
Dependent repos count: 25.3%
Downloads: 27.6%
Maintainers (1)
joakimlindblad
Last synced: 7 months ago

Dependencies

package-lock.json npm
  • accepts 1.3.8
  • ansi-styles 3.2.1
  • array-flatten 1.1.1
  • body-parser 1.20.1
  • bytes 3.1.2
  • call-bind 1.0.2
  • chalk 2.4.2
  • color-convert 1.9.3
  • color-name 1.1.3
  • content-disposition 0.5.4
  • content-type 1.0.4
  • cookie 0.5.0
  • cookie-signature 1.0.6
  • debug 2.6.9
  • define-lazy-prop 2.0.0
  • depd 2.0.0
  • destroy 1.2.0
  • diff-match-patch 1.0.5
  • ee-first 1.1.1
  • encodeurl 1.0.2
  • escape-html 1.0.3
  • escape-string-regexp 1.0.5
  • etag 1.8.1
  • express 4.18.2
  • express-ws 5.0.2
  • fast-xml-parser 4.0.13
  • finalhandler 1.2.0
  • forwarded 0.2.0
  • fresh 0.5.2
  • function-bind 1.1.1
  • get-intrinsic 1.1.3
  • has 1.0.3
  • has-flag 3.0.0
  • has-symbols 1.0.3
  • http-errors 2.0.0
  • iconv-lite 0.4.24
  • inherits 2.0.4
  • ipaddr.js 1.9.1
  • is-docker 2.2.1
  • is-wsl 2.2.0
  • jsondiffpatch 0.4.1
  • media-typer 0.3.0
  • merge-descriptors 1.0.1
  • methods 1.1.2
  • mime 1.6.0
  • mime-db 1.52.0
  • mime-types 2.1.35
  • minimist 1.2.7
  • ms 2.0.0
  • ms 2.1.3
  • negotiator 0.6.3
  • object-inspect 1.12.2
  • on-finished 2.4.1
  • open 8.4.0
  • parseurl 1.3.3
  • path-to-regexp 0.1.7
  • proxy-addr 2.0.7
  • qs 6.11.0
  • range-parser 1.2.1
  • raw-body 2.5.1
  • safe-buffer 5.2.1
  • safer-buffer 2.1.2
  • sanitize-filename 1.6.3
  • send 0.18.0
  • serve-static 1.15.0
  • setprototypeof 1.2.0
  • side-channel 1.0.4
  • statuses 2.0.1
  • strnum 1.0.5
  • supports-color 5.5.0
  • toidentifier 1.0.1
  • truncate-utf8-bytes 1.0.2
  • type-is 1.6.18
  • unpipe 1.0.0
  • utf8-byte-length 1.0.4
  • utils-merge 1.0.1
  • vary 1.1.2
  • ws 7.5.9
package.json npm
  • express ^4.17.3
  • express-ws ^5.0.2
  • fast-xml-parser ^4.0.3
  • jsondiffpatch ^0.4.1
  • minimist ^1.2.6
  • open ^8.4.0
  • sanitize-filename ^1.6.3