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pgp

Polyploid Genotyping Pipeline

https://github.com/gtiley/pgp

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic links in README
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (0.2%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Polyploid Genotyping Pipeline

Basic Info
  • Host: GitHub
  • Owner: gtiley
  • License: mit
  • Language: Nextflow
  • Default Branch: main
  • Size: 106 KB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created about 1 year ago · Last pushed about 1 year ago
Metadata Files
Readme Changelog License Citation

Owner

  • Name: George Tiley
  • Login: gtiley
  • Kind: user
  • Location: Raleigh, NC, USA
  • Company: North Carolina Department of Health and Human Services

GitHub Events

Total
  • Push event: 2
  • Create event: 2
Last Year
  • Push event: 2
  • Create event: 2

Dependencies

modules/local/gatk4/genomicsdbimport/meta.yml cpan
modules/local/gatk4/genotypegvcfs/meta.yml cpan
modules/local/gatk4/haplotypecaller/meta.yml cpan
modules/local/gatk4/selectvariants/meta.yml cpan
modules/nf-core/bbmap/bbduk/meta.yml cpan
modules/nf-core/bwa/index/meta.yml cpan
modules/nf-core/bwa/mem/meta.yml cpan
modules/nf-core/fastp/meta.yml cpan
modules/nf-core/fastqc/meta.yml cpan
modules/nf-core/gatk4/createsequencedictionary/meta.yml cpan
modules/nf-core/gatk4/genomicsdbimport/meta.yml cpan
modules/nf-core/gatk4/genotypegvcfs/meta.yml cpan
modules/nf-core/gatk4/haplotypecaller/meta.yml cpan
modules/nf-core/gatk4/selectvariants/meta.yml cpan
modules/nf-core/gatk4/variantfiltration/meta.yml cpan
modules/nf-core/multiqc/meta.yml cpan
modules/nf-core/picard/markduplicates/meta.yml cpan
modules/nf-core/samtools/faidx/meta.yml cpan
modules/nf-core/samtools/flagstat/meta.yml cpan
modules/nf-core/samtools/idxstats/meta.yml cpan
modules/nf-core/samtools/index/meta.yml cpan
modules/nf-core/samtools/stats/meta.yml cpan
modules/nf-core/samtools/view/meta.yml cpan
subworkflows/nf-core/bam_stats_samtools/meta.yml cpan
subworkflows/nf-core/utils_nextflow_pipeline/meta.yml cpan
subworkflows/nf-core/utils_nfcore_pipeline/meta.yml cpan
subworkflows/nf-core/utils_nfschema_plugin/meta.yml cpan
modules/local/gatk4/genomicsdbimport/environment.yml pypi
modules/local/gatk4/genotypegvcfs/environment.yml pypi
modules/local/gatk4/haplotypecaller/environment.yml pypi
modules/local/gatk4/selectvariants/environment.yml pypi
modules/nf-core/bbmap/bbduk/environment.yml pypi
modules/nf-core/bwa/index/environment.yml pypi
modules/nf-core/bwa/mem/environment.yml pypi
modules/nf-core/fastp/environment.yml pypi
modules/nf-core/fastqc/environment.yml pypi
modules/nf-core/gatk4/createsequencedictionary/environment.yml pypi
modules/nf-core/gatk4/genomicsdbimport/environment.yml pypi
modules/nf-core/gatk4/genotypegvcfs/environment.yml pypi
modules/nf-core/gatk4/haplotypecaller/environment.yml pypi
modules/nf-core/gatk4/selectvariants/environment.yml pypi
modules/nf-core/gatk4/variantfiltration/environment.yml pypi
modules/nf-core/multiqc/environment.yml pypi
modules/nf-core/picard/markduplicates/environment.yml pypi
modules/nf-core/samtools/faidx/environment.yml pypi
modules/nf-core/samtools/flagstat/environment.yml pypi
modules/nf-core/samtools/idxstats/environment.yml pypi
modules/nf-core/samtools/index/environment.yml pypi
modules/nf-core/samtools/stats/environment.yml pypi
modules/nf-core/samtools/view/environment.yml pypi