# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
version: 3.4.1
date-released: '2023-02-28'
title: >-
  Ichthyop: A Lagrangian tool for modelling ichthyoplankton
  dynamics
message: 'If you use this software, please cite it as below.'
type: software
authors:
  - family-names: Barrier
    given-names: Nicolas
    orcid: 'https://orcid.org/0000-0002-1693-4719'
    affiliation: >-
      MARBEC, University Montpellier, IRD, CNRS, Ifremer,
      INRAE, Sète, France
    email: nicolas.barrier@ird.fr
  - family-names: Verley
    given-names: Philippe
    orcid: 'https://orcid.org/0000-0002-5686-2764'
    affiliation: >-
      AMAP, Univ. Montpellier, CIRAD, CNRS, INRAE, IRD,
      Montpellier, France
    email: philippe.verley@ird.fr
  - family-names: Lett
    given-names: Christophe
    orcid: 'https://orcid.org/0000-0001-5809-2452'
    affiliation: >-
      MARBEC, University Montpellier, IRD, CNRS, Ifremer,
      INRAE, Sète, France
    email: christophe.lett@ird.fr
  - given-names: Christian
    family-names: Mullon
    orcid: 'https://orcid.org/0000-0003-3990-9118'
    affiliation: >-
      MARBEC, University Montpellier, IRD, CNRS, Ifremer,
      INRAE, Sète, France
    email: christian.mullon@ird.fr
identifiers:
  - type: doi
    value: 10.5281/zenodo.4243813
    description: Ichthyop DOI
  - type: url
    value: 'https://doi.org/10.1016/j.envsoft.2008.02.005'
    description: Reference paper
repository-code: 'https://github.com/ichthyop/ichthyop'
url: 'https://ichthyop.org'
abstract: >-
  Ichthyop is a free Java tool designed to study the effects
  of physical and biological factors on ichthyoplankton
  dynamics. It incorporates the most important processes
  involved in fish early life: spawning, movement, growth,
  mortality and recruitment. The tool uses as input time
  series of velocity, temperature and salinity fields
  archived from ROMS, MARS, NEMO or SYMPHONIE oceanic models
  (either files or OpenDAP).
keywords:
  - ichthyop
  - biophysical model
  - lagrangian model
  - individual-based model
  - particle tracking
  - fish early life
  - fish eggs and larvae
  - transport
  - diffusion
  - orientation
  - nycthemeral migration
license: GPL-3.0

{
  "@context": "https://doi.org/10.5063/schema/codemeta-2.0",
  "type": "SoftwareSourceCode",
  "applicationCategory": "Marine ecology",
  "author": [
    {
      "id": "https://orcid.org/0000-0002-1693-4719",
      "type": "Person",
      "affiliation": {
        "type": "Organization",
        "name": "MARBEC, University Montpellier, IRD, CNRS, Ifremer, INRAE, Ste, France"
      },
      "email": "nicolas.barrier@ird.fr",
      "familyName": "Barrier",
      "givenName": "Nicolas"
    },
    {
      "id": "https://orcid.org/0000-0002-5686-2764",
      "type": "Person",
      "affiliation": {
        "type": "Organization",
        "name": "AMAP, Univ. Montpellier, CIRAD, CNRS, INRAE, IRD, Montpellier, France"
      },
      "email": "philippe.verley@ird.fr",
      "familyName": "Verley",
      "givenName": "Philippe"
    },
    {
      "id": "https://orcid.org/0000-0001-5809-2452",
      "type": "Person",
      "affiliation": {
        "type": "Organization",
        "name": "MARBEC, University Montpellier, IRD, CNRS, Ifremer, INRAE, Ste, France"
      },
      "email": "christophe.lett@ird.fr",
      "familyName": "Lett",
      "givenName": "Christophe"
    },
    {
      "id": "https://orcid.org/0000-0003-3990-9118",
      "type": "Person",
      "affiliation": {
        "type": "Organization",
        "name": "MARBEC, University Montpellier, IRD, CNRS, Ifremer, INRAE, Ste, France"
      },
      "email": "christian.mullon@ird.fr",
      "familyName": "MULLON",
      "givenName": "Christian"
    }
  ],
  "codeRepository": "https://github.com/ichthyop/ichthyop",
  "contributor": [
    {
      "id": "_:contributor_1",
      "type": "Person",
      "familyName": "Andres",
      "givenName": "Gwendoline"
    },
    {
      "id": "_:contributor_2",
      "type": "Person",
      "familyName": "Barrier",
      "givenName": "Celine"
    },
    {
      "id": "_:contributor_3",
      "type": "Person",
      "familyName": "Blanke",
      "givenName": "Bruno"
    },
    {
      "id": "_:contributor_4",
      "type": "Person",
      "familyName": "Bonhommeau",
      "givenName": "Sylvain "
    },
    {
      "id": "_:contributor_5",
      "type": "Person",
      "familyName": "Brochier",
      "givenName": "Timothe"
    },
    {
      "id": "_:contributor_6",
      "type": "Person",
      "familyName": "Chevalier",
      "givenName": "Cristele "
    },
    {
      "id": "_:contributor_7",
      "type": "Person",
      "familyName": "Dumas",
      "givenName": "Franck"
    },
    {
      "id": "_:contributor_8",
      "type": "Person",
      "familyName": "Dupaix",
      "givenName": "Amael"
    },
    {
      "id": "_:contributor_9",
      "type": "Person",
      "familyName": "Field",
      "givenName": "John"
    },
    {
      "id": "_:contributor_10",
      "type": "Person",
      "familyName": "Flores-Valiente",
      "givenName": "Jorge"
    },
    {
      "id": "_:contributor_11",
      "type": "Person",
      "familyName": "Garreau",
      "givenName": "Pierre"
    },
    {
      "id": "_:contributor_12",
      "type": "Person",
      "familyName": "Hourdin",
      "givenName": "Christophe "
    },
    {
      "id": "_:contributor_13",
      "type": "Person",
      "familyName": "Imzilen",
      "givenName": "Taha"
    },
    {
      "id": "_:contributor_14",
      "type": "Person",
      "familyName": "Jelassi",
      "givenName": "Mariem  "
    },
    {
      "id": "_:contributor_15",
      "type": "Person",
      "familyName": "Kaplan",
      "givenName": "David  "
    },
    {
      "id": "_:contributor_16",
      "type": "Person",
      "familyName": "Lecornu",
      "givenName": "Fabrice "
    },
    {
      "id": "_:contributor_17",
      "type": "Person",
      "familyName": "Parada",
      "givenName": "Carolina "
    },
    {
      "id": "_:contributor_18",
      "type": "Person",
      "familyName": "Pecquerie",
      "givenName": "Laure"
    },
    {
      "id": "_:contributor_19",
      "type": "Person",
      "familyName": "Penven",
      "givenName": "Pierrick "
    },
    {
      "id": "_:contributor_20",
      "type": "Person",
      "familyName": "Podlejski",
      "givenName": "Witold"
    },
    {
      "id": "_:contributor_21",
      "type": "Person",
      "familyName": "Pous",
      "givenName": "Stephane "
    },
    {
      "id": "_:contributor_22",
      "type": "Person",
      "familyName": "Putman",
      "givenName": "Nathan "
    },
    {
      "id": "_:contributor_23",
      "type": "Person",
      "familyName": "Travers-Trolet",
      "givenName": "Morgane "
    },
    {
      "id": "_:contributor_24",
      "type": "Person",
      "familyName": "Vasquez",
      "givenName": "Sebastian"
    }
  ],
  "dateCreated": "2008-09-01",
  "dateModified": "2024-07-10",
  "datePublished": "2008-09-01",
  "description": "Ichthyop is a free Java tool designed to study the effects of physical and biological factors on ichthyoplankton dynamics. It incorporates the most important processes involved in fish early life: spawning, movement, growth, mortality and recruitment. The tool uses as input time series of velocity, temperature and salinity fields archived from ROMS, MARS, NEMO or SYMPHONIE oceanic models (either files or OpenDAP).",
  "downloadUrl": "https://github.com/ichthyop/ichthyop/releases/tag/3.4.1",
  "identifier": "https://doi.org/10.5281/zenodo.4243813",
  "keywords": [
    "ichthyop",
    "biophysical model",
    "lagrangian model",
    "individual-based model",
    "particle tracking",
    "fish early life",
    "fish eggs and larvae",
    "transport",
    "diffusion",
    "orientation",
    "nycthemeral migration"
  ],
  "license": "https://spdx.org/licenses/GPL-3.0",
  "name": "Ichthyop: A Lagrangian tool for modelling ichthyoplankton dynamics",
  "programmingLanguage": "Java",
  "relatedLink": "https://ichthyop.org/",
  "schema:releaseNotes": "https://github.com/ichthyop/ichthyop/compare/3.4.0...3.4.1",
  "runtimePlatform": "JVM",
  "version": "3.4.1",
  "contIntegration": "https://github.com/ichthyop/ichthyop/actions",
  "codemeta:continuousIntegration": {
    "id": "https://github.com/ichthyop/ichthyop/actions"
  },
  "developmentStatus": "active",
  "issueTracker": "https://github.com/ichthyop/ichthyop/issues",
  "referencePublication": "https://doi.org/10.1016/j.envsoft.2008.02.005"
}