concurve
A repository for the 'concurve' R package which generates confidence distributions and likelihood functions. Includes documentation on how to do produce similar graphs for Stata.
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (15.5%) to scientific vocabulary
Keywords
bootstrap-method
compatibility-intervals
confidence-distribution
confidence-intervals
consonance
cumulative-distribution-function
density-function
deviance-function
fiducial-distribution
frequentist-methods
likelihood-functions
r
stata
surprisal-function
Last synced: 4 months ago
·
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Repository
A repository for the 'concurve' R package which generates confidence distributions and likelihood functions. Includes documentation on how to do produce similar graphs for Stata.
Basic Info
- Host: GitHub
- Owner: zadrafi
- License: gpl-3.0
- Language: TeX
- Default Branch: master
- Homepage: https://stat.lesslikely.com/concurve/
- Size: 72.5 MB
Statistics
- Stars: 22
- Watchers: 2
- Forks: 3
- Open Issues: 3
- Releases: 12
Topics
bootstrap-method
compatibility-intervals
confidence-distribution
confidence-intervals
consonance
cumulative-distribution-function
density-function
deviance-function
fiducial-distribution
frequentist-methods
likelihood-functions
r
stata
surprisal-function
Created almost 7 years ago
· Last pushed 7 months ago
Metadata Files
Readme
Changelog
Contributing
License
Code of conduct
Support
Codemeta
README.Rmd
--- output: github_document --- ### `concurve` | Graph Frequentist Distributions of Parameters* * * [](https://CRAN.R-project.org/package=concurve) [](https://www.tidyverse.org/lifecycle/#maturing) [](https://cran.r-project.org/package=concurve) [](https://cran.r-project.org/package=concurve) [](http://www.rdocumentation.org/packages/concurve) [](https://www.gnu.org/licenses/gpl-3.0) [](https://travis-ci.com/zadrafi/concurve) [](https://codecov.io/gh/zadrafi/concurve?branch=master) #### [Compute & Graph](https://data.lesslikely.com/concurve/reference/ggcurve.html) Confidence Distributions and Likelihood Functions
* * * #### For A Better Understanding of What These Are, See the [Background Literature](https://data.lesslikely.com/concurve/articles/literature.html) * * * #### [Compare](https://data.lesslikely.com/concurve/reference/plot_compare.html) The Functions From Different Studies ![]()
Sample image taken from Schweder T, Hjort NL. (2016)
![]()
* * * #### [Export Tables](https://data.lesslikely.com/concurve/reference/curve_table.html) Easily For Word, Powerpoint, & TeX documents
* * * ##### Install the package from [CRAN](https://cran.r-project.org/package=concurve) and check out the [articles](https://data.lesslikely.com/concurve/articles/index.html), which can also be found below. (`It is highly recommended that you look at the articles.`) ```{r eval=FALSE} install.packages("concurve") ``` Try the following script if you run into any installation issues: ```{r eval=FALSE} install.packages("concurve", repos = "https://cloud.r-project.org/", dep = TRUE) ``` Install the developer version from [GitHub](https://github.com/zadrafi/concurve/) using the following: ```{r eval=FALSE} remotes::install_github("zadrafi/concurve@master", dependencies = TRUE) ``` See which versions of the package are currently [supported here](articles/supported.html). * * * #### Articles ##### Check out the [article on using `Stata`](https://data.lesslikely.com/concurve/articles/stata.html) to obtain similar functions. * * * ##### See the following articles: * **[Comparison to Bayesian Posterior Distributions](https://data.lesslikely.com/concurve/articles/bayes.html)** * **[The Bootstrap and Consonance Functions](https://data.lesslikely.com/concurve/articles/bootstrap.html)** * **[Background Literature](https://data.lesslikely.com/concurve/articles/literature.html)** * **[Customizing Plots](https://data.lesslikely.com/concurve/articles/customizing.html)** * **[Examples in R](https://data.lesslikely.com/concurve/articles/examples.html)** * **[Logistic Regression in R](https://data.lesslikely.com/concurve/articles/logistic.html)** * **[Profile Likelihoods](https://data.lesslikely.com/concurve/articles/likelihood.html)** * **[Meta-Analysis Examples](https://data.lesslikely.com/concurve/articles/meta-analysis.html)** * **[Using Stata](https://data.lesslikely.com/concurve/articles/stata.html)** * **[Survival Modeling](https://data.lesslikely.com/concurve/articles/survival.html)** * **[S-values](https://data.lesslikely.com/concurve/articles/svalues.html)** * **[Generating Tables](https://data.lesslikely.com/concurve/articles/tables.html)** * **[Troubleshooting](https://data.lesslikely.com/concurve/articles/troubleshooting.html)** * **[Consonance Functions for Linear Mixed-Effects Models](https://data.lesslikely.com/concurve/articles/variancecomponents.html)** * **[Wish List](https://data.lesslikely.com/concurve/articles/wishlist.html)** * * * ### Citation To properly cite the package, please see the [following page](file:///Users/zad/Desktop/GitHub/concurve/docs/authors.html) or run the R script below. ```{r eval=FALSE} citation("concurve") ``` * * * ### Code of Conduct Please note that the concurve project is released with a [Contributor Code of Conduct](https://data.lesslikely.com/concurve//CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms. ##### Environment The package was currently run on: ```{r session_info, include=TRUE, echo=FALSE} sessionInfo() ``` * * *
Owner
- Name: Zad Rafi
- Login: zadrafi
- Kind: user
- Location: New York City
- Company: NYU Langone
- Website: https://lesslikely.com
- Twitter: DailyZad
- Repositories: 2
- Profile: https://github.com/zadrafi
Medical statistics & epidemiology, interested in using Bayes & classical statistics, R & Stata, the history of statistics, and statistical graphics.
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"cumulative-distribution-function",
"surprisal-function",
"deviance-function"
],
"fileSize": "99399.821KB",
"contIntegration": [
"https://travis-ci.com/zadrafi/concurve",
"https://codecov.io/gh/zadrafi/concurve?branch=master"
],
"readme": "https://github.com/zadrafi/concurve/blob/master/README.md",
"contributor": [
{
"@type": "Person",
"givenName": "Aaron",
"familyName": "Caldwell",
"email": "arcaldwell49@gmail.com",
"@id": "https://orcid.org/0000-0002-4541-6283"
}
],
"copyrightHolder": {},
"funder": {},
"releaseNotes": "https://github.com/zadrafi/concurve/blob/master/NEWS.md",
"citation": [
{
"@type": "SoftwareSourceCode",
"author": [
{
"@type": "Person",
"givenName": "Zad",
"familyName": "Rafi"
},
{
"@type": "Person",
"givenName": "Andrew D.",
"familyName": "Vigotsky"
}
],
"name": "{concurve}: Computes and Plots Compatibility (Confidence) Intervals, P-Values, S-Values, & Likelihood Intervals to Form Consonance, Surprisal, & Likelihood Functions",
"url": "https://CRAN.R-project.org/package=concurve"
},
{
"@type": "ScholarlyArticle",
"datePublished": "2020",
"author": [
{
"@type": "Person",
"givenName": "Zad",
"familyName": "Rafi"
},
{
"@type": "Person",
"givenName": "Sander",
"familyName": "Greenland"
}
],
"name": "Semantic and Cognitive Tools to Aid Statistical Science: Replace Confidence and Significance by Compatibility and Surprise",
"identifier": "10.1186/s12874-020-01105-9",
"url": "https://doi.org/10.1186/s12874-020-01105-9",
"pagination": "244",
"@id": "https://doi.org/10.1186/s12874-020-01105-9",
"sameAs": "https://doi.org/10.1186/s12874-020-01105-9",
"isPartOf": {
"@type": "PublicationIssue",
"datePublished": "2020",
"isPartOf": {
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"PublicationVolume",
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],
"volumeNumber": "20",
"name": "BMC Medical Research Methodology"
}
}
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],
"developmentStatus": "https://www.tidyverse.org/lifecycle/#maturing"
}
GitHub Events
Total
- Watch event: 2
- Push event: 2
- Pull request review event: 4
- Pull request event: 3
Last Year
- Watch event: 2
- Push event: 2
- Pull request review event: 4
- Pull request event: 3
* * *
#### [Export Tables](https://data.lesslikely.com/concurve/reference/curve_table.html) Easily For Word, Powerpoint, & TeX documents
* * *
##### Install the package from [CRAN](https://cran.r-project.org/package=concurve) and check out the [articles](https://data.lesslikely.com/concurve/articles/index.html), which can also be found below.
(`It is highly recommended that you look at the articles.`)
```{r eval=FALSE}
install.packages("concurve")
```
Try the following script if you run into any installation issues:
```{r eval=FALSE}
install.packages("concurve", repos = "https://cloud.r-project.org/", dep = TRUE)
```
Install the developer version from [GitHub](https://github.com/zadrafi/concurve/) using the following:
```{r eval=FALSE}
remotes::install_github("zadrafi/concurve@master", dependencies = TRUE)
```
See which versions of the package are currently [supported here](articles/supported.html).
* * *
#### Articles
##### Check out the [article on using `Stata`](https://data.lesslikely.com/concurve/articles/stata.html) to obtain similar functions.
* * *
##### See the following articles:
* **[Comparison to Bayesian Posterior Distributions](https://data.lesslikely.com/concurve/articles/bayes.html)**
* **[The Bootstrap and Consonance Functions](https://data.lesslikely.com/concurve/articles/bootstrap.html)**
* **[Background Literature](https://data.lesslikely.com/concurve/articles/literature.html)**
* **[Customizing Plots](https://data.lesslikely.com/concurve/articles/customizing.html)**
* **[Examples in R](https://data.lesslikely.com/concurve/articles/examples.html)**
* **[Logistic Regression in R](https://data.lesslikely.com/concurve/articles/logistic.html)**
* **[Profile Likelihoods](https://data.lesslikely.com/concurve/articles/likelihood.html)**
* **[Meta-Analysis Examples](https://data.lesslikely.com/concurve/articles/meta-analysis.html)**
* **[Using Stata](https://data.lesslikely.com/concurve/articles/stata.html)**
* **[Survival Modeling](https://data.lesslikely.com/concurve/articles/survival.html)**
* **[S-values](https://data.lesslikely.com/concurve/articles/svalues.html)**
* **[Generating Tables](https://data.lesslikely.com/concurve/articles/tables.html)**
* **[Troubleshooting](https://data.lesslikely.com/concurve/articles/troubleshooting.html)**
* **[Consonance Functions for Linear Mixed-Effects Models](https://data.lesslikely.com/concurve/articles/variancecomponents.html)**
* **[Wish List](https://data.lesslikely.com/concurve/articles/wishlist.html)**
* * *
### Citation
To properly cite the package, please see the [following page](file:///Users/zad/Desktop/GitHub/concurve/docs/authors.html) or run the R script below.
```{r eval=FALSE}
citation("concurve")
```
* * *
### Code of Conduct
Please note that the concurve project is released with a [Contributor Code of Conduct](https://data.lesslikely.com/concurve//CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.
##### Environment
The package was currently run on:
```{r session_info, include=TRUE, echo=FALSE}
sessionInfo()
```
* * *