Recent Releases of hisat2-pipeline
hisat2-pipeline - HISAT2-pipeline v1.1.1
- Fixed a regression bug causing stringtie to crash due to malformed paths
- Python
Published by mcamagna 10 months ago
hisat2-pipeline - HISAT2-pipeline v1.1.1-bioconda
- Fixed a regression bug causing stringtie to crash due to malformed paths
- Python
Published by mcamagna 10 months ago
hisat2-pipeline - HISAT2-pipeline v1.1.0-bioconda
- Added parameters --hisatoptions and --stringtieoptions that allow passing additional options to HISAT2 and Stringtie
- SAM files are now converted to sorted BAM files on the fly
- Python
Published by mcamagna about 1 year ago
hisat2-pipeline - HISAT2-pipeline v1.1.0
- Added parameters --hisatoptions and --stringtieoptions that allow passing additional options to HISAT2 and Stringtie
- SAM files are now converted to sorted BAM files on the fly
- Python
Published by mcamagna about 1 year ago
hisat2-pipeline - HISAT2-pipeline v1.0.8-bioconda
- Added support for bzip2, xz and gzip compressed fasta and gff files
- Added support for bz2 compressed fastq files
- Python
Published by mcamagna over 1 year ago
hisat2-pipeline - HISAT2-pipeline v1.0.8
- Added support for bzip2, xz and gzip compressed fasta and gff files
- Added support for bz2 compressed fastq files
- Python
Published by mcamagna over 1 year ago
hisat2-pipeline - HISAT2-pipeline v1.0.7-bioconda
Fixed a bug where the custom outfolder path was not correct.
- Python
Published by mcamagna over 2 years ago
hisat2-pipeline - HISAT2-pipeline v1.0.7
Fixed a bug where the custom outfolder path was not correct.
- Python
Published by mcamagna over 2 years ago
hisat2-pipeline - HISAT2-pipeline v1.0.4
Includes parameters to change the reads and genome folder.
- Python
Published by mcamagna over 2 years ago
hisat2-pipeline - HISAT2-pipeline v1.0.3
Includes a bugfix for cases where the reference sequences are all numerical (i.e. chromosomes)
- Python
Published by mcamagna almost 3 years ago
hisat2-pipeline - HISAT2-pipeline v1.0.2
Fixed erroneous merging of abundance files when using the latest stringtie version. Apparently, stringtie does not output the abundance of genes anymore if their expression is zero.
- Python
Published by mcamagna almost 3 years ago
hisat2-pipeline - HISAT2-pipeline v1.0.1
Minor bugfixes and improvements over the previous version.
- Python
Published by mcamagna over 3 years ago
hisat2-pipeline - HISAT2-pipeline v1.0.0
The first stable release of the HISAT2-pipeline
- Python
Published by mcamagna about 4 years ago