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Recent Releases of cohort_creator

cohort_creator - 0.3.0

What's Changed

  • [MAINT] update after release by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/92
  • [STY] use scientific-python best practice recommendations by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/100
  • [MAINT] fix spelling by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/116
  • [MAINT] add python 3.12 in CI by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/108
  • [ENH] add non openneuro by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/124
  • [ENH] update vizualisation by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/131
  • [MAINT] allow to trigger dataset listing updates from GH action tab by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/133
  • [FIX] fix udpate listing code by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/134
  • [FIX] fix modalities to datatypes by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/135
  • [DOC] add abstract OHBM 2024 by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/140
  • [ENH] update listing with: creation date, license, links by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/150
  • [WIP] improve dataset listing and add browse and update sub commands to the CLI by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/155
  • [ENH] Improve dashboard by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/159
  • Update listing by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/160
  • [MAINT] only install dataset with no 404 and save to the correct path by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/161
  • [MAINT] install in editable mode by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/162
  • [MAINT] do not reset dataset listing by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/164
  • [FIX] Make datasets URI more generic by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/169
  • docs: add michellewang as a contributor for bug, and ideas by @allcontributors in https://github.com/neurodatascience/cohort_creator/pull/174
  • docs: add michellewang as a contributor for userTesting by @allcontributors in https://github.com/neurodatascience/cohort_creator/pull/175
  • [FIX] handle datasets with fMRIPrep data in subfolders by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/173
  • [DOC] move contributors badge by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/177
  • [ENH] Update listing and institutions by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/178
  • [STY] use isort by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/196
  • REL 0.3.0 by @Remi-Gau in https://github.com/neurodatascience/cohort_creator/pull/205

New Contributors

  • @allcontributors made their first contribution in https://github.com/neurodatascience/cohort_creator/pull/174

Full Changelog: https://github.com/neurodatascience/cohort_creator/compare/0.2.0...0.3.0

- Python
Published by Remi-Gau almost 2 years ago

cohort_creator - 0.2.0

0.2.0 - 2023-09-03

Changed

  • Adapt to neurobagel query tools new outputs formats by using a participant and a dataset input files. #55 @Remi-Gau

Added

  • [ENH] turns output into a yoda datalad dataset. #84 @Remi-Gau
  • [ENH] pass dataset listings as list of strings via the CLI. #82 @Remi-Gau
  • [ENH] Index dataset and return participant listing if not provided. #81 @Remi-Gau
  • [ENH] Skip mriqc if requested. #80 @Remi-Gau
  • [ENH] Add an "all" sub command that runs install, get and copy in sequence. #65 @Remi-Gau
  • [ENH] Add a dockerfile for the package. #64 @Remi-Gau
  • [ENH] Call MRIQC docker to regenerate group level plots after copying mriqc data. #32 @Remi-Gau
  • [ENH] Create a bagel.csv file for a new cohort to list what pipeline has been run on which subject / session pair. #29 @Remi-Gau
  • [ENH] Change output layout output to comply with recommendations from the "Mega" extension to BIDS. #24 @Remi-Gau
  • [ENH] Implement the usage of a "bids filter file" to define "suffix groups" with their own datatype, BIDS entities and suffix and extensions to flexibly allow to copy data from any datatype for each dataset type. #35 @Remi-Gau
  • [ENH] Allow to run without using any participant file. In this case all participants of each datasets are downloaded. #75 @Remi-Gau

Removed

  • Only use the participants file and not the dataset listing file. #34 @Remi-Gau
  • Change output layout output to now comply with recommendations from the "Mega" extension to BIDS. #24 @Remi-Gau

- Python
Published by Remi-Gau over 2 years ago

cohort_creator - 0.1.0

- Python
Published by Remi-Gau almost 3 years ago