template-snakemake - v1.5.0

Major refactor adding support for current (v8+) versions of Snakemake

- Python
Published by ptrebert 8 months ago

template-snakemake - v1.4.0 release / 2025 update

New release contains updates to commons for git-related operations.

This version of the workflow template only supports Snakemake v7.*

- Python
Published by ptrebert about 1 year ago

template-snakemake - Release v1.2.0: 2023 update

Release updates metadata/LICENSE

- Python
Published by ptrebert about 3 years ago

template-snakemake - v1.1.0 main release

This release features an improved help (Snakemake target show-help exists), improved documentation and an updated init.py script to make use of the constants defined in commons::10_constants.smk

For developers: the commons modules have been restructured, but only extended in terms of the help functionality.

- Python
Published by ptrebert about 3 years ago

template-snakemake - v1.0.0: basic snakemake workflow template

This release version includes the following functionality:

• init.py script for folder and conda env setup
• auto dump of run config
• auto generation of workflow manifest (prep during dry run)
• handling of reference containers / reference container files
• snaketests file for automated testing
• basic documentation of deployment, manifest creation etc.
• documentation still incomplete for convenience functions in commons/

- Python
Published by ptrebert over 3 years ago