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omics-pipelines

https://github.com/dkundnani/omics-pipelines

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
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    .zenodo.json file
    Found .zenodo.json file
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    DOI references
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    Academic publication links
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    Institutional organization owner
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  • ○
    Scientific vocabulary similarity
    Low similarity (13.7%) to scientific vocabulary
Last synced: 9 months ago · JSON representation ·

Repository

Basic Info
  • Host: GitHub
  • Owner: DKundnani
  • Language: Jupyter Notebook
  • Default Branch: main
  • Size: 33.2 KB
Statistics
  • Stars: 1
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 1
Created almost 3 years ago · Last pushed about 1 year ago
Metadata Files
Readme Citation

README.md

Omics-pipelines

To get quality control of files generated by Ribose-Map. Also supported by percentage and composition of rNMPs from ribose-seq output

<!-- --> Commits Contributors Forks Stargazers Website Issues MIT License LinkedIn

Table of Contents
  1. Installation
  2. Usage

Installation

Getting the code

The development version from GitHub with:

sh git clone https://github.com/DKundnani/Omics-pipelines.git

Creating the enviroment with required dependencies

sh conda env create --file /Omics-pipelines/env.yml

Getting QC report

Configure run

```bash vim MMremovalconfigurerun.sh

Change the variables for you run as per mentions in the bash configure file

```

Filtration

```bash bash MMremovalconfigurerun.sh

```

Contributing

Contributions are what make the open source community such an amazing place to learn, inspire, and create. Any contributions you make are greatly appreciated.

If you have a suggestion that would make this better, please fork the repo and create a pull request. You can also simply open an issue with the tag "enhancement". Don't forget to give the project a star! Thanks again!

  1. Fork the Project
  2. Create your Feature Branch (git checkout -b feature/AmazingFeature)
  3. Commit your Changes (git commit -m 'Add some AmazingFeature')
  4. Push to the Branch (git push origin feature/AmazingFeature)
  5. Open a Pull Request

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License

Distributed under the MIT License. See LICENSE.txt for more information.

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Contact

Deepali L. Kundnani - deepali.kundnani@gmail.com LinkedIn

Project Link: https://github.com/yourusername/reponame

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Acknowledgments

Use this space to list resources you find helpful and would like to give credit to. I've included a few of my favorites to kick things off!

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Owner

  • Name: Deepali Kundnani
  • Login: DKundnani
  • Kind: user
  • Location: Atlanta
  • Company: Georgia Institute of Technology

Ph.D. Student, Bioinformatics

Citation (CITATION.cff) 

cff-version: 1.0.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Kundnani"
  given-names: "Deepali"
  orcid: "https://orcid.org/0000-0002-2289-3554"
title: "Omics Pipelines"
version: 1.0.0
date-released: 2024-01-02
url: "https://github.com/DKundnani/Omics-pipelines/"

GitHub Events

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Last Year
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