slicer

Multi-platform, free open source software for visualization and image computing.

Science Score: 77.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 2 DOI reference(s) in README
✓
Academic publication links
Links to: pubmed.ncbi, ncbi.nlm.nih.gov, sciencedirect.com
✓
Committers with academic emails
57 of 269 committers (21.2%) from academic institutions
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (9.5%) to scientific vocabulary

Keywords

3d-printing 3d-slicer c-plus-plus computed-tomography image-guided-therapy image-processing itk kitware medical-image-computing medical-imaging national-institutes-of-health neuroimaging nih python qt registration segmentation tcia-dac tractography vtk

Keywords from Contributors

closember mesh wx tk gtk 3d-slicer-extension open-science meshviewer mesh-processing fem

Last synced: 6 months ago · JSON representation ·

Repository

Multi-platform, free open source software for visualization and image computing.

Basic Info

Host: GitHub
Owner: Slicer
License: other
Language: C++
Default Branch: main
Homepage: https://www.slicer.org
Size: 129 MB

Statistics

Stars: 2,065
Watchers: 46
Forks: 635
Open Issues: 636
Releases: 1

Topics

Created almost 6 years ago · Last pushed 6 months ago

Metadata Files

Readme Contributing License Code of conduct Citation Security Governance Authors

README.md

Slicer, or 3D Slicer, is a free, open source software package for visualization and image analysis.

3D Slicer is natively designed to be available on multiple platforms, including Windows, Linux and macOS.

Build instructions for all platforms are available on the Slicer wiki: - https://slicer.readthedocs.io/en/latest/developerguide/buildinstructions/index.html

For Slicer community announcements and support, visit: - https://discourse.slicer.org

For documentation, tutorials, and more information, please see: - https://www.slicer.org

See License.txt for information on using and contributing.

Owner

Name: Slicer
Login: Slicer
Kind: organization
Location: Worldwide

Website: https://slicer.org
Repositories: 61
Profile: https://github.com/Slicer

Multi-platform, free and open source software package for visualization and medical image computing.

Citation (CITATION.cff)

cff-version: 1.2.0
message: "Please cite this software using the metadata from 'preferred-citation'."
title: "3D Slicer"
repository-code: https://github.com/Slicer/Slicer
website: https://www.slicer.org/
preferred-citation:
  type: article
  title: "3D Slicer as an Image Computing Platform for the Quantitative Imaging Network"
  scope: "Cite this paper if you want to reference the general concepts of the software."
  authors:
    - family-names: Fedorov
      given-names: Andriy
    - family-names: Beichel
      given-names: Reinhard
    - family-names: Kalpathy-Cramer
      given-names: Jayashree
    - family-names: Finet
      given-names: Julien
    - family-names: Fillion-Robin
      given-names: Jean-Christophe
      orcid: 0000-0002-9688-8950
    - family-names: Pujol
      given-names: Sonia
    - family-names: Bauer
      given-names: Christian
    - family-names: Jennings
      given-names: Dominique
    - family-names: Fennessy
      given-names: Fiona
    - family-names: Sonka
      given-names: Milan
    - family-names: Buatti
      given-names: John
    - family-names: Aylward
      given-names: Stephen
      orcid: 0000-0002-7862-8856
    - family-names: Miller
      given-names: James
    - family-names: Pieper
      given-names: Steve
    - family-names: Kikinis
      given-names: Ron
      orcid:
  journal: "Magnetic Resonance Imaging"
  year: 2012
  month: 11
  volume: 30
  issue: 9
  start: 1323
  end: 1341
  doi: 10.1016/j.mri.2012.05.001

GitHub Events

Total

Create event: 127
Commit comment event: 2
Issues event: 223
Watch event: 339
Delete event: 134
Issue comment event: 1,200
Push event: 650
Gollum event: 4
Pull request review comment event: 573
Pull request event: 867
Pull request review event: 1,023
Fork event: 102

Last Year

Create event: 127
Commit comment event: 2
Issues event: 223
Watch event: 339
Delete event: 134
Issue comment event: 1,200
Push event: 650
Gollum event: 4
Pull request review comment event: 573
Pull request event: 867
Pull request review event: 1,023
Fork event: 102

Committers

Last synced: 7 months ago

All Time

Total Commits: 29,990
Total Committers: 269
Avg Commits per committer: 111.487
Development Distribution Score (DDS): 0.768

Past Year

Commits: 664
Committers: 48
Avg Commits per committer: 13.833
Development Distribution Score (DDS): 0.752

Top Committers

Name	Email	Commits
Jean-Christophe Fillion-Robin	j**r@k**m	6,944
Steve Pieper	p**r@b**u	3,911
Andras Lasso	l**o@q**a	2,796
Nicole Aucoin	n**e@b**u	2,359
Julien Finet	j**t@k**m	2,201
Wendy Plesniak	w**p@b**u	1,301
Alex Yarmarkovich	a**y@b**u	1,121
Fedorov	f**v@b**u	707
Jim Miller	m**v@g**m	621
Csaba Pinter	c**r@q**a	573
Bill Lorensen	b**n@g**m	515
James Butler	j**r@s**m	419
Hans Johnson	h**n@u**u	314
Daniel Haehn	h**n@b**u	313
Kyle Sunderland	s**l@g**m	273
Brad Davis	b**s@k**m	260
Sebastien BARRE	s**e@k**m	251
Yanling Liu	l**5@m**v	234
Haiying Liu	h**u@b**u	221
Junichi Tokuda	t**a@b**u	213
Kilian Pohl	p**n@g**m	197
Dave Partyka	d**a@k**m	188
Andreas Freudling	f**g@b**u	178
Luis Ibanez	l**z@k**m	177
dependabot[bot]	4****]	173
Matthew Woehlke	m**e@k**m	163
Demian Wassermann	d**n@b**u	150
jvs@bwh.harvard.edu	j**s@b**u	150
Raul San Jose	r**t@b**u	145
Isaiah Norton	i**n@b**u	131
and 239 more...

Committer Domains (Top 20 + Academic)

kitware.com: 65 bwh.harvard.edu: 29 ge.com: 6 queensu.ca: 5 uiowa.edu: 5 certis-therapeutics.com: 4 esp.sn: 3 mail.nih.gov: 2 gatech.edu: 2 research.ge.com: 2 mevis.fraunhofer.de: 2 ltrace.com.br: 2 cs.queensu.ca: 2 uw.edu: 1 mit.edu: 1 yandex.ru: 1 aol.com: 1 unc.edu: 1 uchicago.edu: 1 live.fr: 1 alum.mit.edu: 1 atre.t.u-tokyo.ac.jp: 1 mayo.edu: 1 stonybrook.edu: 1 cs.unc.edu: 1 childrens.harvard.edu: 1 duke.edu: 1 uoregon.edu: 1 sri.utoronto.ca: 1 mcgill.ca: 1 alumni.brown.edu: 1 email.unc.edu: 1 dem.med.kyusyu-u.ac.jp: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 454
Total pull requests: 1,390
Average time to close issues: 4 months
Average time to close pull requests: 17 days
Total issue authors: 121
Total pull request authors: 74
Average comments per issue: 1.81
Average comments per pull request: 1.48
Merged pull requests: 1,098
Bot issues: 1
Bot pull requests: 333

Past Year

Issues: 156
Pull requests: 1,009
Average time to close issues: 7 days
Average time to close pull requests: 3 days
Issue authors: 65
Pull request authors: 51
Average comments per issue: 1.25
Average comments per pull request: 1.33
Merged pull requests: 819
Bot issues: 1
Bot pull requests: 239

View more stats

Top Authors

Issue Authors

slicerbot (111)
jcfr (83)
lassoan (43)
muratmaga (21)
pieper (18)
jamesobutler (11)
maddin200 (7)
chir-set (7)
cpinter (6)
mauigna06 (6)
jadh4v (5)
dzenanz (5)
shai-ikko (3)
baderstine (3)
riep (3)

Pull Request Authors

jcfr (330)
dependabot[bot] (192)
lassoan (192)
slicer-app[bot] (141)
jamesobutler (94)
Sunderlandkyl (83)
hjmjohnson (63)
cpinter (32)
Punzo (32)
pieper (14)
slicerbot (12)
dzenanz (12)
Leengit (10)
MohamedAllali (9)
RafaelPalomar (9)

Top Labels

Issue Labels

Type: Enhancement (56) Type: Bug (54) good first issue (20) Type: Documentation (18) Domain: Segmentation (9) Domain: build-system (7) Priority: Low (6) Status: Invalid (6) Domain: DICOM (5) Domain: Parameter Node Wrapper (4) test-after-updated-qt (4) Priority: High (3) dependencies (2) Priority: Medium (2) Domain: i18n (2) Status: Draft (1) Domain: UI/UX (1) Status: Duplicate (1) Status: Question (1) Status: Awaiting Response :hourglass_flowing_sand: (1) Status: In Progress (1) make-simple-things-simple (1)

Pull Request Labels

dependencies (201) github_actions (49) Status: Draft (27) Type: Enhancement (15) Type: Bug (14) Domain: build-system (12) Type: Documentation (10) Domain: UI/UX (5) Domain: DICOM (5) Priority: Medium (4) Collaboration: IDC (4) backport:5.x (4) Status: Awaiting Response :hourglass_flowing_sand: (3) Domain: Segmentation (3) Domain: Parameter Node Wrapper (2) good first issue (2) make-simple-things-simple (2) Domain: i18n (2) Priority: Urgent (2) Priority: High (2) Domain: Autocomplete (1) Status: In Progress (1) Priority: Low (1)

Packages

Total packages: 2
Total downloads: unknown

Total dependent packages: 0
(may contain duplicates)
Total dependent repositories: 0
(may contain duplicates)
Total versions: 70

proxy.golang.org: github.com/Slicer/Slicer

Documentation: https://pkg.go.dev/github.com/Slicer/Slicer#section-documentation
License: other
Latest release: v5.8.1+incompatible
published 12 months ago

Versions: 35
Dependent Packages: 0
Dependent Repositories: 0

Rankings

Dependent packages count: 9.0%

Average: 9.6%

Dependent repos count: 10.2%

Last synced: 6 months ago

proxy.golang.org: github.com/slicer/slicer

Documentation: https://pkg.go.dev/github.com/slicer/slicer#section-documentation
License: other
Latest release: v5.8.1+incompatible
published 12 months ago

Versions: 35
Dependent Packages: 0
Dependent Repositories: 0

Rankings

Dependent packages count: 9.0%

Average: 9.6%

Dependent repos count: 10.2%

Last synced: 6 months ago

Dependencies

.github/actions/slicer-build/action.yml actions

Dockerfile * docker

.github/workflows/ci.yml actions

./.github/actions/slicer-build * composite
actions/checkout v3 composite
actions/upload-artifact v2 composite

.github/workflows/codespell.yml actions

Slicer/actions-codespell 2cde61fa89ae8708e737c8204a7ed50de5b4c5b8 composite
actions/checkout v3 composite

.github/workflows/commit-message.yml actions

gsactions/commit-message-checker v2 composite

.github/workflows/lint.yml actions

actions/checkout v3 composite
actions/setup-python v4 composite
pre-commit/action v3.0.0 composite

.github/workflows/update-slicer-certificate-bundle.yml actions

actions/checkout v3 composite
peter-evans/create-pull-request v3 composite

.github/actions/slicer-build/Dockerfile docker

slicer/slicer-base latest build

Modules/Scripted/WebServer/Resources/docroot/package.json npm

@babel/core 7.2.0 development
parcel-bundler ^1.6.1 development

requirements-docs.txt pypi

docutils *
linkify-it-py *
lxml *
myst-parser *
pygments *
sphinx *
sphinx-issues *
sphinx-notfound-page *
sphinx_markdown_tables >=0.0.17
sphinx_rtd_theme >=0.5.2

.github/workflows/scorecard.yml actions

actions/checkout 8ade135a41bc03ea155e62e844d188df1ea18608 composite
actions/upload-artifact a8a3f3ad30e3422c9c7b888a15615d19a852ae32 composite
github/codeql-action/upload-sarif 6a28655e3dcb49cb0840ea372fd6d17733edd8a4 composite
ossf/scorecard-action 08b4669551908b1024bb425080c797723083c031 composite