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arvados

An open source platform for managing and analyzing biomedical big data

https://github.com/arvados/arvados

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    7 of 141 committers (5.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (16.5%) to scientific vocabulary

Keywords

arvados aws azure bigdata bioinformatics cloud cluster cwl docker gcp genomics go python ruby workflow workflow-engine

Keywords from Contributors

multiprocessing mesh parallel-computing prediction interactive
Last synced: 4 months ago · JSON representation ·

Repository

An open source platform for managing and analyzing biomedical big data

Basic Info
  • Host: GitHub
  • Owner: arvados
  • License: other
  • Language: Go
  • Default Branch: main
  • Homepage: https://arvados.org
  • Size: 81.8 MB
Statistics
  • Stars: 408
  • Watchers: 38
  • Forks: 124
  • Open Issues: 23
  • Releases: 0
Topics
arvados aws azure bigdata bioinformatics cloud cluster cwl docker gcp genomics go python ruby workflow workflow-engine
Created over 12 years ago · Last pushed 4 months ago
Metadata Files
Readme Contributing License Code of conduct Citation Security Authors

README.md

comment: # ()

Join the chat at https://gitter.im/arvados/community | Installing Arvados | Installing Client SDKs | Report a bug | Development and Contributing

Arvados is an open source platform for managing, processing, and sharing genomic and other large scientific and biomedical data. With Arvados, bioinformaticians run and scale compute-intensive workflows, developers create biomedical applications, and IT administrators manage large compute and storage resources.

The key components of Arvados are:

  • Keep: Keep is the Arvados storage system for managing and storing large collections of files. Keep combines content addressing and a distributed storage architecture resulting in both high reliability and high throughput. Every file stored in Keep can be accurately verified every time it is retrieved. Keep supports the creation of collections as a flexible way to define data sets without having to re-organize or needlessly copy data. Keep works on a wide range of underlying filesystems and object stores.

  • Crunch: Crunch is the orchestration system for running Common Workflow Language workflows. It is designed to maintain data provenance and workflow reproducibility. Crunch automatically tracks data inputs and outputs through Keep and executes workflow processes in Docker containers. In a cloud environment, Crunch optimizes costs by scaling compute on demand.

  • Workbench: The Workbench web application allows users to interactively access Arvados functionality. It is especially helpful for querying and browsing data, visualizing provenance, and tracking the progress of workflows.

  • Command Line tools: The command line interface (CLI) provides convenient access to Arvados functionality in the Arvados platform from the command line.

  • API and SDKs: Arvados is designed to be integrated with existing infrastructure. All the services in Arvados are accessed through a RESTful API. SDKs are available for Python, Go, R, Perl, Ruby, and Java.

Quick start

To try out Arvados on your local workstation, you can use Arvbox, which provides Arvados components pre-installed in a Docker container (requires Docker 1.9+). After cloning the Arvados git repository:

$ cd arvados/tools/arvbox/bin $ ./arvbox start localdemo

In this mode you will only be able to connect to Arvbox from the same host. To configure Arvbox to be accessible over a network and for other options see http://doc.arvados.org/install/arvbox.html for details.

Documentation

Complete documentation, including the User Guide, Installation documentation, Administrator documentation and API documentation is available at http://doc.arvados.org/

If you wish to build the Arvados documentation from a local git clone, see doc/README.textile for instructions.

Community

Join the chat at https://gitter.im/arvados/community

The Arvados community channel channel at gitter.im is available for live discussion and support.

The Arvados developement channel channel at gitter.im is used to coordinate development.

The Arvados user mailing list is used to announce new versions and other news.

All participants are expected to abide by the Arvados Code of Conduct.

Reporting bugs

Report a bug on dev.arvados.org.

Development and Contributing

See CONTRIBUTING for information about Arvados development and how to contribute to the Arvados project.

The development road map outlines some of the project priorities over the next twelve months.

Licensing

Arvados is Free Software. See COPYING for information about the open source licenses used in Arvados.

Owner

  • Name: arvados
  • Login: arvados
  • Kind: organization

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- name: "The Arvados Authors"
- family-names: "Amstutz"
  given-names: "Peter"
  orcid: "https://orcid.org/0000-0003-3566-7705"
- family-names: "Bértoli"
  given-names: "Javier"
  family-names: "César"
  given-names: "Nico"
- family-names: "Clegg"
  given-names: "Tom"
  orcid: "https://orcid.org/0000-0001-6751-2930"
- family-names: "Di Pentima"
  given-names: "Lucas"
  orcid: "https://orcid.org/0000-0002-2807-6854"
- family-names: "Kutyła"
  given-names: "Daniel"
- family-names: "Li"
  given-names: "Jiayong"
- family-names: "Smith"
  given-names: "Stephen"
- family-names: "Vandewege"
  given-names: "Ward"
  orcid: "https://orcid.org/0000-0002-2527-6949"
- family-names: "Wait Zaranek"
  given-names: "Alexander"
  orcid: "https://orcid.org/0000-0002-0415-9655"
- family-names: "Wait Zaranek"
  given-names: "Sarah"
  orcid: "https://orcid.org/0000-0003-4716-9121"
title: "Arvados"
abstract: "Arvados is an open source platform for managing, processing, and sharing genomic and other large scientific and biomedical data."
type: software
url: "https://github.com/arvados/arvados/"
doi: 10.5281/zenodo.6382942

GitHub Events

Total
  • Watch event: 9
  • Delete event: 28
  • Issue comment event: 87
  • Push event: 227
  • Pull request event: 70
  • Fork event: 10
  • Create event: 45
Last Year
  • Watch event: 9
  • Delete event: 28
  • Issue comment event: 87
  • Push event: 227
  • Pull request event: 70
  • Fork event: 10
  • Create event: 45

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 26,883
  • Total Committers: 141
  • Avg Commits per committer: 190.66
  • Development Distribution Score (DDS): 0.719
Past Year
  • Commits: 2,095
  • Committers: 9
  • Avg Commits per committer: 232.778
  • Development Distribution Score (DDS): 0.647
Top Committers
Name Email Commits
Tom Clegg t****m@c****m 7,552
Peter Amstutz p****z@c****m 2,595
Lucas Di Pentima l****a@c****m 2,336
Peter Amstutz p****z@c****m 1,897
radhika r****a@c****m 1,723
Ward Vandewege w****d@c****m 1,542
Lisa Knox l****x@c****m 1,358
Peter Amstutz p****z@v****m 1,129
Brett Smith b****t@c****m 872
Brett Smith b****h@c****m 870
Michal Klobukowski m****i@c****m 791
Stephen Smith s****n@c****m 706
Pawel Kowalczyk p****k@c****m 358
Tim Pierce t****p@c****m 357
Eric Biagiotti e****i@v****m 249
Daniel Kutyła d****a@c****m 225
Janicki Artur a****i@c****m 219
Bob Aman b****n@g****m 200
Daniel Kos d****s@c****m 166
Javier Bértoli j****i@c****m 162
Steven Bazyl s****l@g****m 149
mishaz m****a@c****m 125
radhika chippada r****a@r****e 120
Fuad Muhic f****c@c****m 109
Phil Hodgson b****t@p****t 108
Fernando Monserrat f****t@g****m 101
Tim Pierce t****p@c****m 78
Joshua C. Randall j****l@a****u 70
Nico Cesar n****o@c****m 46
Tom Morris t****s@v****m 42
and 111 more...
Committer Domains (Top 20 + Academic)
google.com: 15 curii.com: 11 curoverse.com: 10 contractors.roche.com: 9 veritasgenetics.com: 6 peter.shell.qr1hi.arvadosapi.com: 2 clinicalfuture.com: 2 swyman.shell.4xphq.arvadosapi.com: 2 incocesar.com: 1 thehyve.nl: 1 blowmage.com: 1 brettcsmith.org: 1 qualeapps.com: 1 math.mit.edu: 1 weppos.net: 1 unchi.org: 1 zatsman.com: 1 bcosc-virtualbox.(none): 1 sanger.ac.uk: 1 zoepfel.de: 1 alum.mit.edu: 1 genome.wustl.edu: 1 uic.edu: 1 stanford.edu: 1 sanbi.ac.za: 1

Issues and Pull Requests

Last synced: 4 months ago

All Time
  • Total issues: 0
  • Total pull requests: 290
  • Average time to close issues: N/A
  • Average time to close pull requests: 3 months
  • Total issue authors: 0
  • Total pull request authors: 21
  • Average comments per issue: 0
  • Average comments per pull request: 1.92
  • Merged pull requests: 27
  • Bot issues: 0
  • Bot pull requests: 205
Past Year
  • Issues: 0
  • Pull requests: 97
  • Average time to close issues: N/A
  • Average time to close pull requests: 20 days
  • Issue authors: 0
  • Pull request authors: 3
  • Average comments per issue: 0
  • Average comments per pull request: 1.62
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 92
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • dependabot[bot] (205)
  • snyk-bot (19)
  • MajewskiKrzysztof (15)
  • zoe-translates (12)
  • jszlenk (6)
  • jrandall (5)
  • pvanheus (4)
  • mr-c (3)
  • AnetaSta22 (3)
  • lukaszimmermann (2)
  • graingert (2)
  • kinow (2)
  • chlige (2)
  • dunglam2k (2)
  • ldipenti (2)
Top Labels
Issue Labels
Pull Request Labels
dependencies (205) ruby (93) javascript (67) go (43) java (1)

Packages

  • Total packages: 9
  • Total downloads:
    • pypi 27,729 last-month
    • rubygems 146,086 total
  • Total docker downloads: 15
  • Total dependent packages: 3
    (may contain duplicates)
  • Total dependent repositories: 19
    (may contain duplicates)
  • Total versions: 1,676
  • Total maintainers: 2
pypi.org: arvados-python-client

Arvados client library

  • Versions: 697
  • Dependent Packages: 0
  • Dependent Repositories: 11
  • Downloads: 7,448 Last month
  • Docker Downloads: 0
Rankings
Downloads: 3.6%
Docker downloads count: 3.8%
Dependent repos count: 4.4%
Average: 5.5%
Dependent packages count: 10.1%
Maintainers (1)
arvados
Last synced: 4 months ago
pypi.org: arvados-cwl-runner

Arvados Common Workflow Language runner

  • Versions: 369
  • Dependent Packages: 0
  • Dependent Repositories: 5
  • Downloads: 2,216 Last month
Rankings
Dependent repos count: 6.6%
Average: 9.9%
Dependent packages count: 10.0%
Downloads: 13.1%
Maintainers (1)
arvados
Last synced: 4 months ago
rubygems.org: arvados-google-api-client

Fork of google-api-client used by Ruby-based Arvados components.

  • Versions: 15
  • Dependent Packages: 3
  • Dependent Repositories: 3
  • Downloads: 146,086 Total
  • Docker Downloads: 15
Rankings
Docker downloads count: 3.2%
Dependent packages count: 4.0%
Downloads: 7.1%
Dependent repos count: 12.7%
Average: 17.4%
Forks count: 31.6%
Stargazers count: 45.6%
Maintainers (1)
arvados
Last synced: 4 months ago
pypi.org: arvados-fuse

Arvados FUSE driver

  • Versions: 508
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 17,457 Last month
Rankings
Downloads: 6.6%
Dependent packages count: 10.9%
Average: 26.3%
Dependent repos count: 61.3%
Maintainers (1)
arvados
Last synced: 12 months ago
repo1.maven.org: org.arvados:arvados-java-sdk

Arvados Java SDK

  • Versions: 19
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Forks count: 13.0%
Stargazers count: 14.5%
Average: 27.1%
Dependent repos count: 32.0%
Dependent packages count: 48.9%
Last synced: 4 months ago
pypi.org: arvados-cluster-activity

Summarize cluster activity from Arvados audit logs and Prometheus metrics

  • Versions: 4
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 47 Last month
Rankings
Dependent packages count: 9.6%
Average: 31.9%
Dependent repos count: 54.1%
Maintainers (1)
arvados
Last synced: 4 months ago
pypi.org: arvados-user-activity

Summarize user activity from Arvados audit logs

  • Versions: 4
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 46 Last month
Rankings
Dependent packages count: 9.6%
Average: 31.9%
Dependent repos count: 54.1%
Maintainers (1)
arvados
Last synced: 4 months ago
pypi.org: arvados-pam

Arvados PAM module

  • Versions: 32
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 179 Last month
Rankings
Dependent packages count: 10.1%
Downloads: 23.4%
Average: 33.6%
Dependent repos count: 67.3%
Maintainers (1)
arvados
Last synced: 4 months ago
pypi.org: crunchstat-summary

Arvados crunchstat-summary reads crunch log files and summarizes resource usage

  • Versions: 28
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 336 Last month
Rankings
Dependent packages count: 10.9%
Downloads: 35.2%
Average: 35.8%
Dependent repos count: 61.3%
Maintainers (1)
arvados
Last synced: 4 months ago

Dependencies

sdk/R/DESCRIPTION cran
  • R6 * imports
  • XML * imports
  • curl * imports
  • httr * imports
  • jsonlite * imports
  • stringr * imports
  • testthat * suggests
go.mod go
  • cloud.google.com/go v0.54.0
  • github.com/AdRoll/goamz v0.0.0-20170825154802-2731d20f46f4
  • github.com/Azure/azure-sdk-for-go v45.1.0+incompatible
  • github.com/Azure/go-autorest v14.2.0+incompatible
  • github.com/Azure/go-autorest/autorest v0.11.22
  • github.com/Azure/go-autorest/autorest/adal v0.9.17
  • github.com/Azure/go-autorest/autorest/azure/auth v0.5.9
  • github.com/Azure/go-autorest/autorest/azure/cli v0.4.4
  • github.com/Azure/go-autorest/autorest/date v0.3.0
  • github.com/Azure/go-autorest/autorest/to v0.4.0
  • github.com/Azure/go-autorest/autorest/validation v0.3.0
  • github.com/Azure/go-autorest/logger v0.2.1
  • github.com/Azure/go-autorest/tracing v0.6.0
  • github.com/Microsoft/go-winio v0.4.17
  • github.com/alcortesm/tgz v0.0.0-20161220082320-9c5fe88206d7
  • github.com/anmitsu/go-shlex v0.0.0-20161002113705-648efa622239
  • github.com/arvados/cgofuse v1.2.0-arvados1
  • github.com/aws/aws-sdk-go v1.25.30
  • github.com/aws/aws-sdk-go-v2 v0.23.0
  • github.com/beorn7/perks v1.0.1
  • github.com/bradleypeabody/godap v0.0.0-20170216002349-c249933bc092
  • github.com/cespare/xxhash/v2 v2.1.1
  • github.com/containerd/containerd v1.5.10
  • github.com/coreos/go-oidc v2.1.0+incompatible
  • github.com/coreos/go-systemd v0.0.0-20190321100706-95778dfbb74e
  • github.com/creack/pty v1.1.7
  • github.com/dimchansky/utfbom v1.1.1
  • github.com/docker/distribution v2.7.1+incompatible
  • github.com/docker/docker v17.12.0-ce-rc1.0.20210128214336-420b1d36250f+incompatible
  • github.com/docker/go-connections v0.3.0
  • github.com/docker/go-units v0.4.0
  • github.com/dustin/go-humanize v1.0.0
  • github.com/fsnotify/fsnotify v1.4.9
  • github.com/ghodss/yaml v1.0.0
  • github.com/gliderlabs/ssh v0.2.2
  • github.com/go-asn1-ber/asn1-ber v1.4.1
  • github.com/go-ldap/ldap v3.0.3+incompatible
  • github.com/gogo/protobuf v1.3.2
  • github.com/golang-jwt/jwt/v4 v4.1.0
  • github.com/golang/groupcache v0.0.0-20200121045136-8c9f03a8e57e
  • github.com/golang/protobuf v1.5.0
  • github.com/google/shlex v0.0.0-20191202100458-e7afc7fbc510
  • github.com/googleapis/gax-go/v2 v2.0.5
  • github.com/gorilla/mux v1.7.2
  • github.com/hashicorp/golang-lru v0.5.1
  • github.com/hashicorp/yamux v0.0.0-20211028200310-0bc27b27de87
  • github.com/imdario/mergo v0.3.12
  • github.com/jbenet/go-context v0.0.0-20150711004518-d14ea06fba99
  • github.com/jmcvetta/randutil v0.0.0-20150817122601-2bb1b664bcff
  • github.com/jmespath/go-jmespath v0.0.0-20180206201540-c2b33e8439af
  • github.com/jmoiron/sqlx v1.2.0
  • github.com/johannesboyne/gofakes3 v0.0.0-20200716060623-6b2b4cb092cc
  • github.com/julienschmidt/httprouter v1.2.0
  • github.com/kevinburke/ssh_config v0.0.0-20171013211458-802051befeb5
  • github.com/kr/pretty v0.2.1
  • github.com/kr/text v0.1.0
  • github.com/lib/pq v1.10.2
  • github.com/matttproud/golang_protobuf_extensions v1.0.2-0.20181231171920-c182affec369
  • github.com/mitchellh/go-homedir v1.1.0
  • github.com/morikuni/aec v1.0.0
  • github.com/msteinert/pam v0.0.0-20190215180659-f29b9f28d6f9
  • github.com/opencontainers/go-digest v1.0.0
  • github.com/opencontainers/image-spec v1.0.2
  • github.com/pelletier/go-buffruneio v0.2.0
  • github.com/pkg/errors v0.9.1
  • github.com/pquerna/cachecontrol v0.0.0-20180517163645-1555304b9b35
  • github.com/prometheus/client_golang v1.7.1
  • github.com/prometheus/client_model v0.2.0
  • github.com/prometheus/common v0.10.0
  • github.com/prometheus/procfs v0.6.0
  • github.com/ryszard/goskiplist v0.0.0-20150312221310-2dfbae5fcf46
  • github.com/satori/go.uuid v1.2.1-0.20180103174451-36e9d2ebbde5
  • github.com/sergi/go-diff v1.0.0
  • github.com/shabbyrobe/gocovmerge v0.0.0-20180507124511-f6ea450bfb63
  • github.com/sirupsen/logrus v1.8.1
  • github.com/src-d/gcfg v1.3.0
  • github.com/xanzy/ssh-agent v0.1.0
  • go.opencensus.io v0.22.3
  • golang.org/x/crypto v0.0.0-20211117183948-ae814b36b871
  • golang.org/x/net v0.0.0-20211112202133-69e39bad7dc2
  • golang.org/x/oauth2 v0.0.0-20200107190931-bf48bf16ab8d
  • golang.org/x/sys v0.0.0-20210809222454-d867a43fc93e
  • golang.org/x/text v0.3.6
  • golang.org/x/tools v0.1.7
  • google.golang.org/api v0.20.0
  • google.golang.org/appengine v1.6.5
  • google.golang.org/genproto v0.0.0-20201110150050-8816d57aaa9a
  • google.golang.org/grpc v1.33.2
  • google.golang.org/protobuf v1.27.1
  • gopkg.in/asn1-ber.v1 v1.0.0-20181015200546-f715ec2f112d
  • gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15
  • gopkg.in/square/go-jose.v2 v2.5.1
  • gopkg.in/src-d/go-billy.v4 v4.0.1
  • gopkg.in/src-d/go-git-fixtures.v3 v3.5.0
  • gopkg.in/src-d/go-git.v4 v4.0.0
  • gopkg.in/warnings.v0 v0.1.2
  • gopkg.in/yaml.v2 v2.4.0
  • rsc.io/getopt v0.0.0-20170811000552-20be20937449
go.sum go
  • 982 dependencies
sdk/java-v2/build.gradle maven
  • com.fasterxml.jackson.core:jackson-databind 2.9.2 api
  • com.fasterxml.jackson.datatype:jackson-datatype-jdk8 2.9.2 api
  • com.fasterxml.jackson.datatype:jackson-datatype-jsr310 2.9.2 api
  • com.google.guava:guava 23.4-jre api
  • com.squareup.okhttp3:okhttp 3.9.1 api
  • com.typesafe:config 1.3.2 api
  • commons-codec:commons-codec 1.11 api
  • commons-io:commons-io 2.6 api
  • org.slf4j:slf4j-api 1.7.25 api
  • com.squareup.okhttp3:mockwebserver 3.9.1 testImplementation
  • junit:junit 4.12 testImplementation
  • org.assertj:assertj-core 3.8.0 testImplementation
  • org.mockito:mockito-core 3.3.3 testImplementation
sdk/cwl/setup.py pypi
  • arvados-python-client *
  • ciso8601 *
  • cwltool ==3.1.20220224085855
  • networkx *
  • schema-salad ==8.2.20211116214159
  • setuptools *
sdk/python/setup.py pypi
  • ciso8601 *
  • future *
  • google-api-python-client *
  • google-auth <2
  • httplib2 *
  • protobuf <4.0.0dev
  • pycurl *
  • ruamel.yaml *
  • setuptools *
  • ws4py *
services/dockercleaner/setup.py pypi
  • docker-py ==1.7.2
  • setuptools *
services/fuse/setup.py pypi
  • arvados-python-client *
  • ciso8601 *
  • future *
  • llfuse *
  • prometheus_client *
  • python-daemon *
  • setuptools *
tools/crunchstat-summary/setup.py pypi
  • arvados-python-client *
tools/user-activity/setup.py pypi
  • arvados-python-client *
apps/workbench/Gemfile rubygems
  • byebug >= 0 development
  • capybara ~> 2.5.0 development
  • flamegraph >= 0 development
  • headless ~> 1.0.2 development
  • launchy ~> 2.4.0 development
  • minitest ~> 5.10.3 development
  • mocha >= 0 development
  • poltergeist ~> 1.5.1 development
  • rack-mini-profiler >= 0 development
  • rails-controller-testing >= 0 development
  • rails-perftest >= 0 development
  • ruby-debug-passenger >= 0 development
  • ruby-prof >= 0 development
  • rvm-capistrano >= 0 development
  • sassc-rails >= 0 development
  • selenium-webdriver ~> 3 development
  • simplecov ~> 0.7 development
  • simplecov-rcov >= 0 development
  • uglifier ~> 2.0 development
  • RedCloth >= 0
  • activerecord-nulldb-adapter >= 0
  • andand >= 0
  • angularjs-rails ~> 1.3.8
  • arvados ~> 2.1.5
  • bootstrap-sass ~> 3.4.1
  • bootstrap-tab-history-rails >= 0
  • bootstrap-x-editable-rails >= 0
  • deep_merge >= 0
  • httpclient ~> 2.5
  • jquery-rails >= 0
  • lograge >= 0
  • logstash-event >= 0
  • mime-types >= 0
  • morrisjs-rails >= 0
  • multi_json >= 0
  • npm-rails >= 0
  • oj >= 0
  • passenger >= 0
  • piwik_analytics >= 0
  • rails ~> 5.2.0
  • raphael-rails >= 0
  • responders ~> 2.0
  • safe_yaml >= 0
  • sass >= 0
  • signet < 0.12
  • sprockets ~> 3.0
  • sshkey >= 0
  • themes_for_rails >= 0
apps/workbench/Gemfile.lock rubygems
  • 121 dependencies
doc/Gemfile rubygems
  • RedCloth >= 0
  • colorize >= 0
  • liquid ~> 4.0.0
  • zenweb >= 0
doc/Gemfile.lock rubygems
  • RedCloth 4.3.2
  • coderay 1.1.3
  • colorize 0.8.1
  • commonjs 0.2.7
  • kramdown 1.17.0
  • less 2.6.0
  • liquid 4.0.3
  • makerakeworkwell 1.0.4
  • rake 13.0.1
  • zenweb 3.10.4
sdk/cli/Gemfile rubygems
  • minitest >= 5.0.0
  • rake >= 0
  • signet <= 0.11
sdk/cli/arvados-cli.gemspec rubygems
  • activesupport >= 3.2.13, < 5.3
  • andand ~> 1.3, >= 1.3.3
  • arvados >= 1.4.1.20190320201707
  • arvados-google-api-client >= 0.8.7.3, < 0.8.9
  • curb ~> 0.8
  • json >= 1.7.7, < 3
  • launchy < 2.5
  • oj < 3.10.9
  • optimist ~> 3.0
sdk/ruby/Gemfile rubygems
  • minitest >= 5.0.0
  • mocha >= 0
  • rake >= 0
  • signet <= 0.11
sdk/ruby/arvados.gemspec rubygems
  • activesupport >= 3
  • andand ~> 1.3, >= 1.3.3
  • arvados-google-api-client >= 0.8.7.3, < 0.8.9
  • faraday >= 0.17.4
  • i18n ~> 0
  • json >= 1.7.7, < 3
  • jwt >= 0.1.5, < 2
services/api/Gemfile rubygems
  • byebug >= 0 development
  • factory_bot_rails >= 0 development
  • listen >= 0 development
  • mocha >= 0 development
  • ruby-prof ~> 0.15.0 development
  • simplecov ~> 0.7.1 development
  • simplecov-rcov >= 0 development
  • test-unit ~> 3.0 development
  • acts_as_api >= 0
  • andand >= 0
  • arvados ~> 2.1.5
  • httpclient >= 0
  • jquery-rails >= 0
  • lograge >= 0
  • logstash-event >= 0
  • minitest = 5.10.3
  • multi_json >= 0
  • oj >= 0
  • optimist >= 0
  • passenger >= 0
  • pg ~> 1.0
  • rails ~> 5.2.0
  • rails-controller-testing >= 0
  • rails-observers >= 0
  • rails-perftest >= 0
  • responders ~> 2.0
  • safe_yaml >= 0
  • signet < 0.12
  • sprockets ~> 3.0
  • sshkey >= 0
  • themes_for_rails >= 0
services/api/Gemfile.lock rubygems
  • actioncable 5.2.8.1
  • actionmailer 5.2.8.1
  • actionpack 5.2.8.1
  • actionview 5.2.8.1
  • activejob 5.2.8.1
  • activemodel 5.2.8.1
  • activerecord 5.2.8.1
  • activestorage 5.2.8.1
  • activesupport 5.2.8.1
  • acts_as_api 1.0.1
  • addressable 2.8.0
  • andand 1.3.3
  • arel 9.0.0
  • arvados 2.1.5
  • arvados-google-api-client 0.8.7.4
  • autoparse 0.3.3
  • builder 3.2.4
  • byebug 11.0.1
  • concurrent-ruby 1.1.10
  • crass 1.0.6
  • erubi 1.10.0
  • extlib 0.9.16
  • factory_bot 5.0.2
  • factory_bot_rails 5.0.1
  • faraday 0.15.4
  • ffi 1.9.25
  • globalid 1.0.0
  • googleauth 0.9.0
  • httpclient 2.8.3
  • i18n 0.9.5
  • jquery-rails 4.3.3
  • json 2.5.1
  • jwt 1.5.6
  • launchy 2.5.0
  • listen 3.2.1
  • lograge 0.10.0
  • logstash-event 1.2.02
  • loofah 2.18.0
  • mail 2.7.1
  • marcel 1.0.2
  • memoist 0.16.2
  • metaclass 0.0.4
  • method_source 1.0.0
  • mini_mime 1.1.2
  • mini_portile2 2.8.0
  • minitest 5.10.3
  • mocha 1.8.0
  • multi_json 1.15.0
  • multipart-post 2.1.1
  • nio4r 2.5.8
  • nokogiri 1.13.7
  • oj 3.9.2
  • optimist 3.0.0
  • os 1.1.1
  • passenger 6.0.2
  • pg 1.1.4
  • power_assert 1.1.4
  • public_suffix 4.0.6
  • racc 1.6.0
  • rack 2.2.4
  • rack-test 2.0.2
  • rails 5.2.8.1
  • rails-controller-testing 1.0.4
  • rails-dom-testing 2.0.3
  • rails-html-sanitizer 1.4.3
  • rails-observers 0.1.5
  • rails-perftest 0.0.7
  • railties 5.2.8.1
  • rake 13.0.6
  • rb-fsevent 0.10.3
  • rb-inotify 0.9.10
  • request_store 1.4.1
  • responders 2.4.1
  • retriable 1.4.1
  • ruby-prof 0.15.9
  • safe_yaml 1.0.5
  • signet 0.11.0
  • simplecov 0.7.1
  • simplecov-html 0.7.1
  • simplecov-rcov 0.2.3
  • sprockets 3.7.2
  • sprockets-rails 3.4.2
  • sshkey 2.0.0
  • test-unit 3.3.1
  • themes_for_rails 0.5.1
  • thor 1.2.1
  • thread_safe 0.3.6
  • tzinfo 1.2.10
  • websocket-driver 0.7.5
  • websocket-extensions 0.1.5
services/login-sync/Gemfile rubygems
  • minitest >= 5.0.0 development
  • mocha >= 1.5.0 development
  • rake >= 0 development
services/login-sync/arvados-login-sync.gemspec rubygems
  • arvados >= 1.3.3.20190320201707
  • arvados-google-api-client >= 0.8.7.3, < 0.8.9
  • launchy < 2.5
  • signet < 0.12
build/package-build-dockerfiles/centos7/Dockerfile docker
  • build_${HOSTTYPE} latest build
  • centos 7 build
build/package-build-dockerfiles/debian10/Dockerfile docker
  • build_${HOSTTYPE} latest build
  • debian buster build
build/package-build-dockerfiles/debian11/Dockerfile docker
  • build_${HOSTTYPE} latest build
  • debian bullseye build
build/package-build-dockerfiles/ubuntu1804/Dockerfile docker
  • build_${HOSTTYPE} latest build
  • ubuntu bionic build
build/package-build-dockerfiles/ubuntu2004/Dockerfile docker
  • build_${HOSTTYPE} latest build
  • ubuntu focal build
build/package-test-dockerfiles/centos7/Dockerfile docker
  • centos 7 build
build/package-test-dockerfiles/debian10/Dockerfile docker
  • debian buster build
build/package-test-dockerfiles/debian11/Dockerfile docker
  • debian bullseye build
build/package-test-dockerfiles/ubuntu1804/Dockerfile docker
  • ubuntu bionic build
build/package-test-dockerfiles/ubuntu2004/Dockerfile docker
  • ubuntu focal build
docker/jobs/Dockerfile docker
  • debian buster-slim build
docker/migrate-docker19/Dockerfile docker
  • debian 8 build
build/package-build-dockerfiles/rocky8/Dockerfile docker
  • build_${HOSTTYPE} latest build
  • rockylinux 8.6-minimal build
build/package-test-dockerfiles/rocky8/Dockerfile docker
  • rockylinux 8.6-minimal build
sdk/ruby-google-api-client/Gemfile rubygems
  • jruby-openssl >= 0
sdk/ruby-google-api-client/arvados-google-api-client.gemspec rubygems
  • coveralls ~> 0.7.11 development
  • kramdown ~> 1.5 development
  • rake ~> 10.0 development
  • rspec ~> 3.1 development
  • simplecov ~> 0.9.2 development
  • yard ~> 0.8 development
  • activesupport >= 3.2, < 8.0
  • addressable ~> 2.3
  • autoparse ~> 0.3
  • extlib ~> 0.9
  • faraday ~> 2.0
  • faraday-gzip ~> 2.0
  • faraday-multipart ~> 1.0
  • googleauth ~> 1.0
  • launchy ~> 2.4
  • multi_json ~> 1.10
  • retriable ~> 1.4
  • signet ~> 0.16.0