pathlinkR - 1.4.0 for Bioconductor 3.21

What's Changed

• Fix plotFoldChange by @travis-m-blimkie in https://github.com/hancockinformatics/pathlinkR/pull/18

Full Changelog: https://github.com/hancockinformatics/pathlinkR/compare/v1.2.0...v1.4.0

- R
Published by travis-m-blimkie about 1 year ago

pathlinkR - v1.2.0

What's Changed

• Support for GSEA (via fgsea) in pathway enrichment and subsequent plotting function
• Added KEGG as database option when running pathway enrichment with Sigora (gene pairs) or ReactomePA (traditional over-representation)
• Updated vignette providing detailed examples for all functions
• Various small tweaks and bug fixes

Full Changelog: https://github.com/hancockinformatics/pathlinkR/compare/v1.0.1...v1.2.0

- R
Published by travis-m-blimkie over 1 year ago

pathlinkR - v1.0.1

v1.0.1

• Fixed inconsistent default value in ppiPlotNetwork
• Switched to theme setting for ppiPlotNetwork that doesn't impact other, subsequent plots

Full Changelog: https://github.com/hancockinformatics/pathlinkR/compare/v1.0.0...v1.0.1

- R
Published by travis-m-blimkie almost 2 years ago

pathlinkR - pathlinkR v1.0.0

What's Changed

• Fixed legend toggle in ppiPlotNetwork, added test case. by @travis-m-blimkie in https://github.com/hancockinformatics/pathlinkR/pull/10
• Merge Devel 0.99.382 by @travis-m-blimkie in https://github.com/hancockinformatics/pathlinkR/pull/11
• Updated links in vignette to new github pages. by @travis-m-blimkie in https://github.com/hancockinformatics/pathlinkR/pull/12
• Merging for version bump by @travis-m-blimkie in https://github.com/hancockinformatics/pathlinkR/pull/13

Full Changelog: https://github.com/hancockinformatics/pathlinkR/commits/v1.0.0

- R
Published by travis-m-blimkie about 2 years ago