Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
4 of 27 committers (14.8%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (3.4%) to scientific vocabulary
Keywords from Contributors
bioconductor-package
bioconductor
bioinformatics
proteomics
rnaseq
derfinder
mass-spectrometry
core-package
annotation-agnostic
gene
Last synced: 10 months ago
·
JSON representation
Repository
Devel repository for bsseq
Basic Info
- Host: GitHub
- Owner: hansenlab
- Language: R
- Default Branch: devel
- Size: 48.9 MB
Statistics
- Stars: 38
- Watchers: 3
- Forks: 28
- Open Issues: 71
- Releases: 0
Created over 12 years ago
· Last pushed 10 months ago
Metadata Files
Readme
README.md
R package: bsseq
This is the developer version of Bioconductor package bsseq. Install in R as:
r
install.packages("BiocManager")
BiocManager::install("bsseq", version = "devel")
Owner
- Name: Hansen lab
- Login: hansenlab
- Kind: organization
- Location: Baltimore
- Website: https://www.hansenlab.org
- Repositories: 44
- Profile: https://github.com/hansenlab
Research in statistical genomics
GitHub Events
Total
- Issues event: 8
- Watch event: 2
- Issue comment event: 13
- Push event: 13
- Pull request event: 6
- Fork event: 2
- Create event: 3
Last Year
- Issues event: 8
- Watch event: 2
- Issue comment event: 13
- Push event: 13
- Pull request event: 6
- Fork event: 2
- Create event: 3
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Peter Hickey | p****y@g****m | 137 |
| Kasper Daniel Hansen | k****n@g****m | 82 |
| Kasper D. Hansen | k****n@s****u | 69 |
| khansen | k****n@b****8 | 67 |
| d.tenenbaum | d****m@b****8 | 19 |
| Dan Tenenbaum | d****a@f****g | 18 |
| Herve Pages | h****s@f****g | 15 |
| Hervé Pagès | h****s@f****g | 14 |
| Nitesh Turaga | n****a@g****m | 14 |
| Bioconductor Git-SVN Bridge | b****c@b****g | 11 |
| hpages@fhcrc.org | h****s@f****g@b****8 | 8 |
| yixuanchen | 1****a | 5 |
| Hervé Pagès | h****b@g****m | 4 |
| J Wokaty | j****y@s****u | 2 |
| LiNk-NY | m****9@g****m | 2 |
| yixuan-chen-elisa | y****0@j****u | 2 |
| vobencha | v****a@g****m | 2 |
| vobencha | v****n@r****g | 2 |
| J Wokaty | j****y | 2 |
| Keegan Korthauer | k****r@g****m | 2 |
| Martin Morgan | m****n@f****g | 1 |
| p.hickey | p****y@b****8 | 1 |
| mtmorgan@fhcrc.org | m****n@f****g@b****8 | 1 |
| Peter Hickey | h****y@w****u | 1 |
| Marc Carlson | m****n@f****g | 1 |
| m.carlson | m****n@b****8 | 1 |
| John Lawson | j****n | 1 |
Committer Domains (Top 20 + Academic)
fhcrc.org: 6
wehi.edu.au: 1
roswellpark.org: 1
jhu.edu: 1
sph.cuny.edu: 1
bioconductor.org: 1
fredhutch.org: 1
stat.berkeley.edu: 1
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 83
- Total pull requests: 37
- Average time to close issues: 4 months
- Average time to close pull requests: 12 days
- Total issue authors: 47
- Total pull request authors: 11
- Average comments per issue: 2.7
- Average comments per pull request: 1.03
- Merged pull requests: 30
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 8
- Pull requests: 5
- Average time to close issues: about 3 hours
- Average time to close pull requests: 20 days
- Issue authors: 8
- Pull request authors: 3
- Average comments per issue: 0.13
- Average comments per pull request: 0.4
- Merged pull requests: 4
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- PeteHaitch (16)
- kasperdanielhansen (13)
- kdkorthauer (2)
- RicardoMartins-Ferreira (2)
- MohamedRefaat92 (2)
- desmodus1984 (2)
- CathG (2)
- shawpa (2)
- ravitharakan (2)
- BegonaMartinez (2)
- rcavalcante (2)
- romansch-hub (1)
- Nick-Eagles (1)
- jkrainer (1)
- blackbox13 (1)
Pull Request Authors
- PeteHaitch (22)
- yixuan-chen-elisa (3)
- SrenBlikdal (2)
- LTLA (2)
- kdkorthauer (2)
- lcolladotor (1)
- j-lawson (1)
- areyesq89 (1)
- aerval (1)
- sandrews5 (1)
- kevinrue (1)
Top Labels
Issue Labels
bug (3)
documentation (3)
optimization (3)
enhancement (1)
Pull Request Labels
Dependencies
DESCRIPTION
cran
- BiocGenerics * depends
- GenomicRanges >= 1.41.5 depends
- R >= 4.0 depends
- SummarizedExperiment >= 1.19.5 depends
- methods * depends
- BSgenome * imports
- Biobase * imports
- BiocParallel * imports
- Biostrings * imports
- DelayedArray >= 0.15.16 imports
- DelayedMatrixStats >= 1.5.2 imports
- GenomeInfoDb * imports
- HDF5Array >= 1.19.11 imports
- IRanges >= 2.23.9 imports
- R.utils >= 2.0.0 imports
- Rcpp * imports
- S4Vectors >= 0.27.12 imports
- data.table >= 1.11.8 imports
- graphics * imports
- gtools * imports
- limma * imports
- locfit * imports
- permute * imports
- rhdf5 * imports
- scales * imports
- stats * imports
- utils * imports
- BSgenome.Hsapiens.UCSC.hg38 * suggests
- BatchJobs * suggests
- BiocStyle * suggests
- Matrix * suggests
- beachmat >= 1.5.2 suggests
- bsseqData * suggests
- doParallel * suggests
- knitr * suggests
- rmarkdown * suggests
- rtracklayer * suggests
- testthat * suggests
.github/workflows/check-bioc.yml
actions
- JamesIves/github-pages-deploy-action releases/v4 composite
- actions/cache v3 composite
- actions/checkout v3 composite
- actions/upload-artifact master composite
- docker/build-push-action v4 composite
- docker/login-action v2 composite
- docker/setup-buildx-action v2 composite
- docker/setup-qemu-action v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite