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Recent Releases of pasmopy

pasmopy - v0.5.0 (May 2023)

What's Changed

  • Update email address by @himoto in https://github.com/pasmopy/pasmopy/pull/139
  • Allow to use Sphinx v6 by @himoto in https://github.com/pasmopy/pasmopy/pull/141
  • Add support for Python 3.11 by @himoto in https://github.com/pasmopy/pasmopy/pull/142
  • Update .readthedocs.yaml by @himoto in https://github.com/pasmopy/pasmopy/pull/144
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/pasmopy/pasmopy/pull/131
  • Release v0.5.0 by @himoto in https://github.com/pasmopy/pasmopy/pull/145

Full Changelog: https://github.com/pasmopy/pasmopy/compare/v0.4.4...v0.5.0

- Python
Published by himoto almost 3 years ago

pasmopy - v0.4.4

What's Changed

  • Fix pypi-publish.yml by @himoto in https://github.com/pasmopy/pasmopy/pull/136
  • Bump version to 0.4.4 by @himoto in https://github.com/pasmopy/pasmopy/pull/137

Full Changelog: https://github.com/pasmopy/pasmopy/compare/v0.4.3...v0.4.4

- Python
Published by himoto about 3 years ago

pasmopy - v0.4.2

What's Changed

  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/pasmopy/pasmopy/pull/103
  • Update description in online docs by @himoto in https://github.com/pasmopy/pasmopy/pull/106
  • Fix maxdepth by @himoto in https://github.com/pasmopy/pasmopy/pull/108
  • Update citation info by @himoto in https://github.com/pasmopy/pasmopy/pull/109
  • Update example code for Michaelis-Menten kinetics by @himoto in https://github.com/pasmopy/pasmopy/pull/110
  • Add CodeQL workflow for GitHub code scanning by @lgtm-com in https://github.com/pasmopy/pasmopy/pull/113
  • Remove unused import by @himoto in https://github.com/pasmopy/pasmopy/pull/115
  • Fix and update example 2 by @himoto in https://github.com/pasmopy/pasmopy/pull/117
  • Don't use try-except by @himoto in https://github.com/pasmopy/pasmopy/pull/119
  • Update action/checkout@v2 -> v3 by @himoto in https://github.com/pasmopy/pasmopy/pull/120
  • Remove LGTM.com code quality badges by @himoto in https://github.com/pasmopy/pasmopy/pull/122
  • Release v0.4.2 by @himoto in https://github.com/pasmopy/pasmopy/pull/123

New Contributors

  • @lgtm-com made their first contribution in https://github.com/pasmopy/pasmopy/pull/113

Full Changelog: https://github.com/pasmopy/pasmopy/compare/v0.4.1...v0.4.2

- Python
Published by himoto about 3 years ago

pasmopy - v0.4.1

What's Changed

  • Fix link to c-Fos example by @himoto in https://github.com/pasmopy/pasmopy/pull/101
  • Bump minimal biomass version to 0.10 by @himoto in https://github.com/pasmopy/pasmopy/pull/104

Full Changelog: https://github.com/pasmopy/pasmopy/compare/v0.4.0...v0.4.1

- Python
Published by himoto over 3 years ago

pasmopy - v0.4.0 (August 2022)

What's Changed

  • Release v0.4.0 by @himoto in https://github.com/pasmopy/pasmopy/pull/90
  • Update dependent biomass version by @himoto in https://github.com/pasmopy/pasmopy/pull/91
  • Add module for drug-response data analysis by @himoto in https://github.com/pasmopy/pasmopy/pull/92
  • Add members by @himoto in https://github.com/pasmopy/pasmopy/pull/94
  • Enable calling biomass.OptimizationResults by @himoto in https://github.com/pasmopy/pasmopy/pull/96
  • Add protocols by @himoto in https://github.com/pasmopy/pasmopy/pull/98
  • Fix appearance in docs by @himoto in https://github.com/pasmopy/pasmopy/pull/99
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/pasmopy/pasmopy/pull/88

Full Changelog: https://github.com/pasmopy/pasmopy/compare/v0.3.1...v0.4.0

- Python
Published by himoto over 3 years ago

pasmopy - v0.3.1

What's Changed

  • Release v0.3.1 by @himoto in https://github.com/pasmopy/pasmopy/pull/85

Full Changelog: https://github.com/pasmopy/pasmopy/compare/v0.3.0...v0.3.1

- Python
Published by himoto over 3 years ago

pasmopy - v0.3.0 (June 2022)

What's Changed

  • Release v0.3.0 by @himoto in https://github.com/pasmopy/pasmopy/pull/78

Please also refer to #77

Correspondence table: | biomass | pasmopy | | --- | --- | | 0.5.2 - 0.5.5 | 0.1.x | | 0.6.0 - 0.6.2 | 0.2.x | | 0.7.0+ | 0.3.x |

Full Changelog: https://github.com/pasmopy/pasmopy/compare/v0.2.3...v0.3.0

- Python
Published by himoto over 3 years ago

pasmopy - v0.2.3

What's Changed

  • Fix rule: degrade by @himoto in https://github.com/pasmopy/pasmopy/pull/73

Full Changelog: https://github.com/pasmopy/pasmopy/compare/v0.2.2...v0.2.3

- Python
Published by himoto over 3 years ago

pasmopy - v0.2.2

What's Changed

  • Enable specifying directionality in binding-dissociation reaction via arrow types by @himoto in https://github.com/pasmopy/pasmopy/pull/65
  • Remove optimizer.py from pasmopy by @himoto in https://github.com/pasmopy/pasmopy/pull/66
  • Update accepted arrow types by @himoto in https://github.com/pasmopy/pasmopy/pull/67
  • Release v0.2.2 by @himoto in https://github.com/pasmopy/pasmopy/pull/71

Full Changelog: https://github.com/pasmopy/pasmopy/compare/v0.2.1...v0.2.2

- Python
Published by himoto almost 4 years ago

pasmopy - v0.2.1

What's Changed

  • Add module for global optimization by @himoto in https://github.com/pasmopy/pasmopy/pull/60
  • Argument progress: whether the progress bar is animating or not by @himoto in https://github.com/pasmopy/pasmopy/pull/62
  • Release v0.2.1 by @himoto in https://github.com/pasmopy/pasmopy/pull/63

Full Changelog: https://github.com/pasmopy/pasmopy/compare/v0.2.0...v0.2.1

- Python
Published by himoto almost 4 years ago

pasmopy - v0.2.0 (April 2022)

What's Changed

  • Release v0.2.0 by @himoto in https://github.com/pasmopy/pasmopy/pull/58

Full Changelog: https://github.com/pasmopy/pasmopy/compare/v0.1.2...v0.2.0

- Python
Published by himoto almost 4 years ago

pasmopy - v0.1.2

What's Changed

  • Add CITATION.cff file by @himoto in https://github.com/pasmopy/pasmopy/pull/47
  • Update tests by @himoto in https://github.com/pasmopy/pasmopy/pull/48
  • Allow to set similarity_threshold by @himoto in https://github.com/pasmopy/pasmopy/pull/49
  • Update pypi-publish by @himoto in https://github.com/pasmopy/pasmopy/pull/53
  • Update normalization method by @himoto in https://github.com/pasmopy/pasmopy/pull/51
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/pasmopy/pasmopy/pull/57

Full Changelog: https://github.com/pasmopy/pasmopy/compare/v0.1.1...v0.1.2

- Python
Published by himoto almost 4 years ago

pasmopy - v0.1.1

What's Changed

  • Add new argument: context to run() functions in patient_model.py by @himoto in https://github.com/pasmopy/pasmopy/pull/42
  • Thermodynamic restrictions by @himoto in https://github.com/pasmopy/pasmopy/pull/43
  • New terminology registration by @himoto in https://github.com/pasmopy/pasmopy/pull/44
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/pasmopy/pasmopy/pull/40
  • Release v0.1.1 by @himoto in https://github.com/pasmopy/pasmopy/pull/45

Full Changelog: https://github.com/pasmopy/pasmopy/compare/v0.1.0...v0.1.1

- Python
Published by himoto almost 4 years ago

pasmopy - v0.1.0

What's Changed

  • Release v0.1.0 by @himoto in https://github.com/pasmopy/pasmopy/pull/39
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/pasmopy/pasmopy/pull/34

Full Changelog: https://github.com/pasmopy/pasmopy/compare/v0.0.8...v0.1.0

- Python
Published by himoto over 4 years ago

pasmopy - v0.0.8

What's Changed

  • Update reaction rules by @himoto in https://github.com/pasmopy/pasmopy/pull/35
  • Release v0.0.8 by @himoto in https://github.com/pasmopy/pasmopy/pull/38

Full Changelog: https://github.com/pasmopy/pasmopy/compare/v0.0.7...v0.0.8

- Python
Published by himoto over 4 years ago

pasmopy - v0.0.7

What's Changed

  • Update example: EGF signaling by @himoto in https://github.com/pasmopy/pasmopy/pull/32
  • Release v0.0.7 by @himoto in https://github.com/pasmopy/pasmopy/pull/33

Full Changelog: https://github.com/pasmopy/pasmopy/compare/v0.0.6...v0.0.7

- Python
Published by himoto over 4 years ago

pasmopy - v0.0.6

What's Changed

  • fix readme by @johannesnicolaus in https://github.com/pasmopy/pasmopy/pull/28
  • Release v0.0.6 by @himoto in https://github.com/pasmopy/pasmopy/pull/31
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/pasmopy/pasmopy/pull/29

New Contributors

  • @johannesnicolaus made their first contribution in https://github.com/pasmopy/pasmopy/pull/28

Full Changelog: https://github.com/pasmopy/pasmopy/compare/v0.0.5...v0.0.6

- Python
Published by himoto over 4 years ago

pasmopy - v0.0.5

- Python
Published by himoto over 4 years ago

pasmopy - v0.0.4

  • Several updates for docs
  • Rename function in preprocessing/
    • add() -> add_to_params()

- Python
Published by himoto over 4 years ago

pasmopy -

test

- Python
Published by himoto over 4 years ago

pasmopy -

test

- Python
Published by himoto over 4 years ago

pasmopy -

- Python
Published by himoto over 4 years ago