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raggedexperiment

Matrix-like representations of mutation and CN data

https://github.com/bioconductor/raggedexperiment

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 14 committers (7.1%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.1%) to scientific vocabulary

Keywords

copynumber core-package data-structure mutations u24ca289073

Keywords from Contributors

bioconductor-packages bioconductor bioinformatics functional-similarity gene gene-sets pathway-analysis similarity similarity-measurement mirror
Last synced: 6 months ago · JSON representation

Repository

Matrix-like representations of mutation and CN data

Basic Info
Statistics
  • Stars: 5
  • Watchers: 9
  • Forks: 4
  • Open Issues: 3
  • Releases: 0
Topics
copynumber core-package data-structure mutations u24ca289073
Created almost 9 years ago · Last pushed 8 months ago
Metadata Files
Readme Changelog

README.md

RaggedExperiment

Matrix-like representation of genomic range data in Bioconductor

Installation

We recommend installing the stable version of RaggedExperiment using:

```r if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")

BiocManager::install("RaggedExperiment") ```

Owner

  • Name: Bioconductor
  • Login: Bioconductor
  • Kind: organization

Software for the analysis and comprehension of high-throughput genomic data

GitHub Events

Total
  • Watch event: 1
  • Push event: 20
  • Pull request event: 2
  • Create event: 3
Last Year
  • Watch event: 1
  • Push event: 20
  • Pull request event: 2
  • Create event: 3

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 196
  • Total Committers: 14
  • Avg Commits per committer: 14.0
  • Development Distribution Score (DDS): 0.546
Past Year
  • Commits: 25
  • Committers: 4
  • Avg Commits per committer: 6.25
  • Development Distribution Score (DDS): 0.28
Top Committers
Name Email Commits
LiNk-NY m****9@g****m 89
LiNk-NY m****z@r****g 40
Martin Morgan m****n@r****g 18
Nitesh Turaga n****a@g****m 14
LiNk-NY m****s@r****g 8
Martin Morgan m****n@f****g 7
Hervé Pagès h****s@f****g 6
J Wokaty j****y@s****u 4
vobencha v****n@r****g 2
Herve Pages h****s@f****g 2
J Wokaty j****y 2
vobencha v****a@g****m 2
Lydia-King l****8@n****e 1
lgeistlinger l****r@b****e 1
Committer Domains (Top 20 + Academic)
roswellpark.org: 4 fhcrc.org: 2 bio.ifi.lmu.de: 1 nuigalway.ie: 1 sph.cuny.edu: 1 fredhutch.org: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 27
  • Total pull requests: 4
  • Average time to close issues: 30 days
  • Average time to close pull requests: 4 days
  • Total issue authors: 9
  • Total pull request authors: 4
  • Average comments per issue: 3.52
  • Average comments per pull request: 0.75
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: about 5 hours
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 1.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • lgeistlinger (10)
  • LiNk-NY (5)
  • lwaldron (5)
  • biobenkj (2)
  • csoneson (1)
  • drighelli (1)
  • yli110-stat697 (1)
  • dietmarfdz (1)
  • jason-weirather (1)
Pull Request Authors
  • bd4everyone (2)
  • Lydia-King (1)
  • LiNk-NY (1)
  • lgeistlinger (1)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

DESCRIPTION cran
  • GenomicRanges >= 1.37.17 depends
  • R >= 3.6.0 depends
  • BiocGenerics * imports
  • GenomeInfoDb * imports
  • IRanges * imports
  • Matrix * imports
  • MatrixGenerics * imports
  • S4Vectors * imports
  • SummarizedExperiment * imports
  • methods * imports
  • stats * imports
  • BiocStyle * suggests
  • MultiAssayExperiment * suggests
  • knitr * suggests
  • rmarkdown * suggests
  • testthat * suggests