esm_tools

Simple Infrastructure for Earth System Simulations

https://github.com/esm-tools/esm_tools

Science Score: 77.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 1 DOI reference(s) in README
✓
Academic publication links
Links to: zenodo.org
✓
Committers with academic emails
1 of 82 committers (1.2%) from academic institutions
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (11.9%) to scientific vocabulary

Last synced: 6 months ago · JSON representation ·

Repository

Simple Infrastructure for Earth System Simulations

Basic Info

Host: GitHub
Owner: esm-tools
License: gpl-2.0
Language: Shell
Default Branch: release
Homepage: https://esm-tools.github.io/
Size: 17.3 MB

Statistics

Stars: 28
Watchers: 7
Forks: 15
Open Issues: 133
Releases: 3

Created almost 6 years ago · Last pushed 6 months ago

Metadata Files

Readme Changelog Contributing License Citation

README.rst

=========
ESM Tools
=========

Documentation
-------------

.. image:: https://readthedocs.org/projects/esm-tools/badge/?version=latest

For our complete documentation, please check https://esm-tools.readthedocs.io/en/latest/index.html.

How to cite this software
-------------------------
To cite ESM-Tools, please use the following DOI: https://zenodo.org/doi/10.5281/zenodo.3737927. This DOI represents all versions of the software, and will always pointing to the latest version available on https://zenodo.org.


Before you continue
-------------------

You will need python 3 (possibly version 3.6 or newer), a version of git that is not ancient (everything newer than 2.10 should be good), and up-to-date pip (``pip install -U pip``) to install the `esm_tools`. That means that on the supported machines, you could for example use the following settings:

albedo::

    $ module load git
    $ module load python

levante.dkrz.de::

    $ module load git
    $ module load python3

glogin.hlrn.de / blogin.hlrn.de::

    $ module load git
    $ module load anaconda3

juwels.fz-juelich.de::

    $ module load Stages/2022
    $ module load git
    $ module load Python/3.9.6

aleph::

    $ module load git
    $ module load python

Note that some machines might raise an error ``conflict netcdf_c`` when loading ``anaconda3``. In that case you will need to swap ``netcdf_c`` with ``anaconda3``::

    $ module unload netcdf_c
    $ module load anaconda3



Installing
----------

1. First, make sure you add the following lines to one of your login or profile files, i.e. ``~/.bash_profile``, ``~/.bashrc``, ``~/.profile``, etc.::

        $ export PATH=$PATH:~/.local/bin
        $ export LC_ALL=en_US.UTF-8
        $ export LANG=en_US.UTF-8

2. Inside the same login or profile file, add also the ``module`` commands necessary for the HPC system you are using (find the lines in the section above).

3. You can choose to source now your login or profile file, so that the ``module`` and ``export`` commands are run (e.g. ``$ source ~/.bash_profile``).

4. To use the new version of the ESM-Tools, now rewritten in Python, clone this repository::

        $ git clone https://github.com/esm-tools/esm_tools.git

5. Then, run the ``install.sh``::

        $ ./install.sh

You should now have the command line tools ``esm_master`` and ``esm_runscripts``, which replace the old version.

Owner

Name: ESM-Tools
Login: esm-tools
Kind: organization

Website: www.esm-tools.net
Repositories: 13
Profile: https://github.com/esm-tools

Citation (CITATION.cff)

cff-version: 1.2.0
message: "If you use ESM-Tools software, please cite using the metadata below."
authors:
- family-names: "Gierz"
  given-names: "Paul"
  orcid: "https://orcid.org/0000-0002-4512-087X"
  affiliation: "Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung"
- family-names: "Andrés-Martínez"
  given-names: "Miguel"
  orcid: "https://orcid.org/0000-0002-1525-5546"
  affiliation: "Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung"
- family-names: "Barbi"
  given-names: "Dirk"
  orcid: "https://orcid.org/0000-0002-5053-1788"
  affiliation: "Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung"
- family-names: "Wieters"
  given-names: "Nadine"
  orcid: "https://orcid.org/0000-0002-5092-7766"
  affiliation: "Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung"
- family-names: "Cristini"
  given-names: "Luisa"
  orcid: "https://orcid.org/0000-0003-4791-0776"
  affiliation: "Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung"
- family-names: "Streffing"
  given-names: "Jan"
  orcid: "https://orcid.org/0000-0001-9515-3322"
  affiliation: "Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung"
- family-names: "Wahl"
  given-names: "Sebastian"
  orcid: "https://orcid.org/0000-0002-1360-5776"
  affiliation: "GEOMAR Helmholtz-Zentrum für Ozeanforschung"
- family-names: "Ural"
  given-names: "Deniz"
- family-names: "Kjellsson"
  given-names: "Joakim"
  orcid: "https://orcid.org/0000-0002-6405-5276"
  affiliation: "Rossby Center, Swedish Meteorological and Hydrological Institute"
- family-names: "Chegini"
  given-names: "Fatemeh"
- family-names: "Khosravi"
  given-names: "Sara"

title: "ESM-Tools"
doi: 10.5281/zenodo.5787476
date-released: 2021-12-16
url: "https://github.com/esm-tools/esm_tools"

Committers

Last synced: almost 3 years ago

All Time

Total Commits: 2,886
Total Committers: 82
Avg Commits per committer: 35.195
Development Distribution Score (DDS): 0.634

Top Committers

Name	Email	Commits
Miguel Andres-Martinez	m**z@a**e	1,055
Paul Gierz	p**z@a**e	413
Dirk Barbi	d**i@a**e	198
Sebastian Wahl	s**l@g**e	181
Miguel	6**m@u**m	154
Jan Streffing	j**g@a**e	142
denizural	d**6@g**m	110
BumpVersion Action	b**n@g**s	99
JanStreffing	J**g@a**e	48
Nadine Wieters	n**s@a**e	47
Joakim Kjellsson	j**n@g**e	36
chrisdane	c**k@a**e	33
Paul Gierz	p**z@a**e	27
ICCP Guest	J****g	27
Paul Gierz	p**z@a**m	25
Nikolay Koldunov	k**n@g**m	21
Lars Ackermann	l**n@a**e	21
Kai Himstedt	h**t@d**e	19
deniz ural	d**l@a**e	19
shkjocke	s**e@b**e	17
shkjocke	s**e@b**e	15
shkjocke	s**e@b**e	11
shkjocke	s**e@b**e	10
Joakim Kjellsson	j**m@n**h	10
shkjocke	s**e@b**e	9
shkjocke	s**e@b**e	9
shkjocke	s**e@b**e	8
Xavier Yepes	x**s@a**e	7
Xiaoxu Shi	x**i@a**e	6
Kai Himstedt	k**t@u**e	6
and 52 more...

Committer Domains (Top 20 + Academic)

awi.de: 20 jwlogin09.juwels: 3 jwlogin06.juwels: 3 jwlogin07.juwels: 3 blogin4.usr.hlrn.de: 2 blogin6.usr.hlrn.de: 2 glogin5.usr.hlrn.de: 2 mlogin100.hpc.dkrz.de: 2 mlogin101.hpc.dkrz.de: 2 mlogin105.hpc.dkrz.de: 2 geomar.de: 2 blogin1.usr.hlrn.de: 1 blogin3.usr.hlrn.de: 1 blogin2.usr.hlrn.de: 1 dkrz.de: 1 awi.com: 1 blogin7.usr.hlrn.de: 1 blogin5.usr.hlrn.de: 1 uni-hamburg.de: 1 blogin8.usr.hlrn.de: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 199
Total pull requests: 467
Average time to close issues: 7 months
Average time to close pull requests: about 1 month
Total issue authors: 34
Total pull request authors: 16
Average comments per issue: 4.97
Average comments per pull request: 2.5
Merged pull requests: 322
Bot issues: 0
Bot pull requests: 18

Past Year

Issues: 55
Pull requests: 182
Average time to close issues: 23 days
Average time to close pull requests: 15 days
Issue authors: 16
Pull request authors: 11
Average comments per issue: 3.55
Average comments per pull request: 2.01
Merged pull requests: 119
Bot issues: 0
Bot pull requests: 5

View more stats

Top Authors

Issue Authors

JanStreffing (40)
chrisdane (20)
pgierz (18)
mandresm (15)
tsemmler05 (14)
joakimkjellsson (11)
nwieters (11)
hajlaci (11)
jannitzbon (5)
seb-wahl (5)
l975421700 (4)
a270105 (3)
ackerlar (3)
antoniofis10000 (3)
fernandadialzira (3)

Pull Request Authors

mandresm (174)
pgierz (84)
JanStreffing (72)
ackerlar (50)
nwieters (47)
seb-wahl (21)
dependabot[bot] (19)
joakimkjellsson (8)
SimonPorr (6)
chrisdane (6)
christgau (2)
denizural (1)
tsemmler05 (1)
mbutzin (1)
jannitzbon (1)

Top Labels

Issue Labels

enhancement (28) bug (27) Stale (22) error handling (18) documentation (15) outdated? (15) Closed by github-actions (14) feature request (13) echam (8) esm_runscripts (7) cleanup (6) awiesm (6) levante (6) awicm (6) fesom (6) oasis (5) esm_master (5) albedo (5) slurm (4) question (4) UX (4) workflow manager (3) continuous integration (3) help (2) help wanted (2) Sprint (2) new machine (2) Hackathon (2) pism (2) awicm-recom (2)

Pull Request Labels

enhancement (30) dependencies (20) awicm (16) Stale (14) bug (14) cleanup (6) oasis (6) Sprint (5) documentation (5) error handling (4) continuous integration (3) echam (2) refactoring (2) awiesm (2) oifs (2) esm_runscripts (2) Hackathon (2) python (2) juwels (2) medusa (1) offline coupling (1) pool_issue (1) fesom (1) workflow manager (1) question (1) jsbach (1)

Packages

Total packages: 1
Total downloads:
- pypi 220 last-month

Total dependent packages: 0
Total dependent repositories: 1
Total versions: 39
Total maintainers: 2

pypi.org: esm-tools

ESM Tools external infrastructure for Earth System Modelling

Homepage: https://github.com/esm-tools/esm_tools
Documentation: https://esm-tools.readthedocs.io/
License: GNU General Public License v2
Latest release: 6.54.3
published 10 months ago

Versions: 39
Dependent Packages: 0
Dependent Repositories: 1
Downloads: 220 Last month

Rankings

Dependent packages count: 7.4%

Forks count: 11.5%

Stargazers count: 13.1%

Average: 14.7%

Downloads: 19.5%

Dependent repos count: 22.2%

Maintainers (2)

pgierz ESM-Tools

Last synced: 7 months ago

Dependencies

.github/workflows/esm_tests_computer_workflow.yml actions

actions/checkout v3 composite

.github/workflows/esm_tools_actions.yml actions

actions/checkout v2 composite

.github/workflows/esm_tools_actions_hpc_awi_ollie.yml actions

Legorooj/skip-ci main composite
actions/checkout v2 composite

.github/workflows/esm_tools_actions_hpc_awi_ollie_manual_run.yml actions

actions/checkout v2 composite

.github/workflows/esm_tools_actions_novm.yml actions

actions/checkout v2 composite
actions/setup-python v4 composite

.github/workflows/esm_tools_publish.yml actions

actions/checkout v2 composite
pypa/gh-action-pypi-publish release/v1 composite

.github/workflows/pre-merge_actions.yml actions

actions/checkout v2 composite
jasonamyers/github-bumpversion-action v1.0.4 composite

utils/requirements_dev.txt pypi

Sphinx ==1.8.5 development
bump2version ==0.5.11 development
coverage ==4.5.4 development
flake8 ==3.7.8 development
pip ==21.1 development
tox ==3.14.0 development
twine ==1.14.0 development
watchdog ==0.9.0 development
wheel ==0.38.1 development

.github/workflows/approve_esm_tests_changes.yml actions

.github/workflows/esm_tests.yml actions

.github/workflows/esm_tools_awicm.yml actions

.github/workflows/esm_tools_awiesm.yml actions

.github/workflows/esm_tools_echam-standalone.yml actions

.github/workflows/esm_tools_fesom-standalone.yml actions

.github/workflows/esm_tools_pism-standalone.yml actions

.github/workflows/stale.yml actions

actions/stale v5 composite

setup.py pypi

utils/environment.yaml pypi

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

esm_tools

Science Score: 77.0%

Repository

Basic Info

Statistics

Metadata Files

README.rst

Owner

Citation (CITATION.cff)

Committers

All Time

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

pypi.org: esm-tools

Rankings

Maintainers (2)

Dependencies