GenomicPlot - Upgraded to Bioconductor 3.19

Upgraded to be compatible with Bioconductor 3.19

What's Changed

• makeTxDbFromGRanges() has moved from GenomicFeatures to txdbmaker by @hpages in https://github.com/shuye2009/GenomicPlot/pull/1

New Contributors

• @hpages made their first contribution in https://github.com/shuye2009/GenomicPlot/pull/1

Full Changelog: https://github.com/shuye2009/GenomicPlot/compare/v0.99.16...v1.2.4

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Published by shuye2009 almost 2 years ago

GenomicPlot - Data documentation and PCA plot for bam correlation

Documented data in inst/extdata, such that each data file has a separate entry in the manual. Created new data in data directory Added runable examples for each plot function Unified color scheme in plotpeakannotation

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Published by shuye2009 almost 3 years ago

GenomicPlot - enabled support for macOS

more tests are added and moved some tests to longtests

- R
Published by shuye2009 about 3 years ago

GenomicPlot - shrunk the size of the package

In inst/extdata, replaced bam files and gtf file with precomputed rds files.

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Published by shuye2009 about 3 years ago

GenomicPlot - made changes to comply with Bioconductor

Added more examples to function documentations

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Published by shuye2009 about 3 years ago

GenomicPlot -

Limited operations that can be performed on score matrix when inputFiles is not null, so that only the ratio-over-input plots can be used as final results.

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Published by shuye2009 about 3 years ago

GenomicPlot - modified matrix imputation method

Matrix imputation method is changed from 'half of median of column means' to 'half of minimum of non-zero values', also the imputation is limited to non-negative matrices only.

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Published by shuye2009 about 3 years ago

GenomicPlot - v0.1.0

Full Changelog: https://github.com/shuye2009/GenomicPlot/commits/v0.1.0

This is the first stable release of GenomicPlot, an R package for NGS data visualization. Any comments and suggestions are appreciated.

- R
Published by shuye2009 about 3 years ago