netZooR - 1.6.2

• export ALPACA, SAMBAR functions
• new lioness parameter for data merging "mode"

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Published by marouenbg about 1 year ago

netZooR - 1.6.1

Updates to MONSTER and to authorship list

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Published by taraeicher over 1 year ago

netZooR - Wichita

• Adding BLOBFISH
• Fixing documentation website

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Published by marouenbg over 1 year ago

netZooR - 1.5.18

• Updates to MONSTER, PUMA, DRAGON.

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Published by marouenbg over 1 year ago

netZooR - 1.5.17

• R4.3 support
• addition of YARN as source code (vs dependency in earlier versions)
• Bug fixes in DRAGON, PUMA
• Better docs in MONSTER

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Published by marouenbg almost 2 years ago

netZooR - Mateur

• add COBRA
• update TIGER

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Published by marouenbg over 2 years ago

netZooR - 1.4

• Adding TIGER
• Improving Pandapy and PUMA implementations
• Additional docs

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Published by marouenbg almost 3 years ago

netZooR - 1.3

• BioC 3.17 release
• adding PUMA

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Published by marouenbg almost 3 years ago

netZooR - 1.2.2

• Zenodo version

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Published by marouenbg about 3 years ago

netZooR - 1.2.1

• Adding DRAGON and unit tests

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Published by marouenbg about 3 years ago

netZooR - 1.1.16

• adding SPIDER in netZooR

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Published by marouenbg about 3 years ago

netZooR - 1.1.15

• Tests are back in bioconductor
• Smaller tests on github actions
• ALPACA and CRANE edge case resolution for singleton communities
• new bioc release

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Published by marouenbg over 3 years ago

netZooR - 1.0

• adding YARN
• Bioconductor release
• lightweight installation

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Published by marouenbg over 4 years ago

netZooR - 0.99.85

• Final first bioconductor release https://github.com/Bioconductor/Contributions/issues/2238#event-5625307066

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Published by marouenbg over 4 years ago

netZooR - 0.99.49

• Bioconductor release

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Published by marouenbg over 4 years ago

netZooR - 0.99.1

• Switch to GitHub actions for continuous integration
• Support for Ubuntu and Macos
• Suport for R v4 and $ v3.6

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Published by marouenbg over 4 years ago

netZooR - Paarl

• EGRET was added to netZooR
• EGRET tutorial
• EGRET unit tests

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Published by marouenbg over 5 years ago

netZooR - 0.8

• CRANE was added to netZooR
• OTTER tutorial
• Updates to PANDA and LIONESS tutorials
• Fixes to MONSTER and new unit tests

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Published by marouenbg over 5 years ago

netZooR - 0.7

• New tool: OTTER
• unit test for OTTER
• compatibility with R4.0
• compatibility of stringDB v10 and v11

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Published by marouenbg almost 6 years ago

netZooR - 0.6.1

• fix for default behavior of PANDA across platforms
  • in pandaR 1.19.4
  • panda.py in this release
    

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Published by marouenbg about 6 years ago

netZooR - netZooR 0.6.0

1. Add MONSTER
2. Add pandaR as a dependency.
3. Add lioness() function - be able to run gene co-expression networks and PANDA single sample networks.
4. Modify the original function names into panda.py()(used to be panda()) and lioness.py()(used to be lioness()) to distinguish from panda() from pandaR and lioness() from above.

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Published by twangxxx about 6 years ago

netZooR - netZooR 0.5.1

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Published by marouenbg about 6 years ago

netZooR - netZooR 0.5.0

Built a dedicated documentation website: https://netzoo.github.io/netZooR/ Renamed the most of functions with the algorithm name as the prefix. Added a quick-starts vignette can be accessed by browseVignettes("netZooR") Tools included: PANDA LIONESS CONDOR ALPACA SAMBAR

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Published by twangxxx over 6 years ago

netZooR - original import

This is the original code as imported from John Platig, Megha Padi, and Tian Wang repo. animals included: PANDA LIONESS CONDOR ALPACA

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Published by marouenbg over 6 years ago