Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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✓DOI references
Found 4 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (10.1%) to scientific vocabulary
Keywords
analyze-isomirs
bioconductor
isomirs
mirna
r
Keywords from Contributors
bioconductor-package
genomics
gene
bioinformatics
rna-seq
looking-for-maintainer
core-package
proteomics
mass-spectrometry
single-cell-rna-seq
Last synced: 6 months ago
·
JSON representation
Repository
analyze isomiRs from seqbuster tool
Basic Info
- Host: GitHub
- Owner: lpantano
- License: mit
- Language: R
- Default Branch: main
- Homepage: http://lpantano.github.io/isomiRs/
- Size: 28.6 MB
Statistics
- Stars: 8
- Watchers: 2
- Forks: 3
- Open Issues: 19
- Releases: 2
Topics
analyze-isomirs
bioconductor
isomirs
mirna
r
Created over 11 years ago
· Last pushed 7 months ago
Metadata Files
Readme
Changelog
License
README.md
isomiRs
Analyze isomiRs from seqbuster tool or any BAM file after using seqbuster miraligner
Installation
This is an R package.
Bioconductor stable version
r
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
install.packages("BiocManager")
BiocManager::install("isomiRs")
Bioconductor latest version
r
devtools::install_git("https://git@git.bioconductor.org/packages/isomiRs")
devtools development version
r
install.packages("devtools")
devtools::install_github("lpantano/isomiRs")
Owner
- Name: Lorena Pantano
- Login: lpantano
- Kind: user
- Location: Boston
- Website: http://lpantano.github.io
- Repositories: 45
- Profile: https://github.com/lpantano
PhD in miRNA analysis in mental disease @ CRG, Barcelona, Spain. Experience in NGS data analysis. Love python, R, and data integration. twitter:@lopantano
GitHub Events
Total
- Issues event: 2
- Delete event: 5
- Issue comment event: 7
- Push event: 1
Last Year
- Issues event: 2
- Delete event: 5
- Issue comment event: 7
- Push event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Lorena Pantano | l****o@g****m | 305 |
| l.pantano | l****o@b****8 | 36 |
| Nitesh Turaga | n****a@g****m | 14 |
| Lorena Pantano | l****o@a****m | 6 |
| Dan Tenenbaum | d****a@f****g | 4 |
| d.tenenbaum | d****m@b****8 | 4 |
| hpages@fhcrc.org | h****s@f****g@b****8 | 4 |
| Herve Pages | h****s@f****g | 4 |
| vobencha | v****a@g****m | 2 |
| Hervé Pagès | h****s@f****g | 2 |
| vobencha | v****n@r****g | 2 |
| Hervé Pagès | h****b@g****m | 1 |
| LiNk-NY | m****9@g****m | 1 |
| Mattias | m****6@p****m | 1 |
| Sergei Ryazansky | s****y@g****m | 1 |
| Martin Morgan | m****n@f****g | 1 |
| mtmorgan@fhcrc.org | m****n@f****g@b****8 | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: over 1 year ago
All Time
- Total issues: 25
- Total pull requests: 4
- Average time to close issues: 4 months
- Average time to close pull requests: about 2 months
- Total issue authors: 11
- Total pull request authors: 3
- Average comments per issue: 3.72
- Average comments per pull request: 1.75
- Merged pull requests: 3
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 6
- Pull requests: 2
- Average time to close issues: N/A
- Average time to close pull requests: 3 months
- Issue authors: 1
- Pull request authors: 1
- Average comments per issue: 0.5
- Average comments per pull request: 3.5
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- lpantano (6)
- bounlu (6)
- palbioinfor (3)
- kicheolkim (2)
- mshadbolt (2)
- BineStancic (1)
- gnvalbuena (1)
- zxl124 (1)
- Godye1320 (1)
- jsimonas (1)
- hmkim (1)
- trachtok (1)
Pull Request Authors
- bounlu (4)
- DrHogart (1)
- Matt-Int (1)
Top Labels
Issue Labels
enhancement (3)
analysis (2)
bug (2)
internal (2)
plots (1)
Pull Request Labels
Dependencies
DESCRIPTION
cran
- R >= 4.0 depends
- SummarizedExperiment * depends
- AnnotationDbi * imports
- Biobase * imports
- BiocGenerics * imports
- DEGreport * imports
- DESeq2 * imports
- GGally * imports
- GenomicRanges * imports
- IRanges * imports
- RColorBrewer * imports
- S4Vectors * imports
- assertive.sets * imports
- broom * imports
- cluster * imports
- cowplot * imports
- dplyr * imports
- ggplot2 * imports
- gplots * imports
- grDevices * imports
- graphics * imports
- grid * imports
- gridExtra * imports
- gtools * imports
- limma * imports
- methods * imports
- readr * imports
- reshape * imports
- rlang * imports
- stats * imports
- stringr * imports
- tibble * imports
- tidyr * imports
- BiocStyle * suggests
- knitr * suggests
- org.Mm.eg.db * suggests
- pheatmap * suggests
- rmarkdown * suggests
- targetscan.Hs.eg.db * suggests
- testthat * suggests
.github/workflows/check-bioc.yml
actions
- JamesIves/github-pages-deploy-action releases/v4 composite
- actions/cache v3 composite
- actions/checkout v3 composite
- actions/upload-artifact master composite
- docker/build-push-action v4 composite
- docker/login-action v2 composite
- docker/setup-buildx-action v2 composite
- docker/setup-qemu-action v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite