Science Score: 33.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 1 DOI reference(s) in README -
✓Academic publication links
Links to: plos.org -
✓Committers with academic emails
2 of 7 committers (28.6%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.8%) to scientific vocabulary
Keywords
Repository
K-means clustering for large single-cell datasets
Basic Info
Statistics
- Stars: 11
- Watchers: 3
- Forks: 4
- Open Issues: 5
- Releases: 0
Topics
Metadata Files
README.md
mbkmeans: Mini-batch k-means clustering for single-cell RNA-seq
This package implements the mini-batch k-means algorithm for large datasets, including support for on-disk data representation.
The method is described in details in the paper:
Installation
In virtually all cases, installing from Bioconductor is recommended.
{r}
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("mbkmeans")
In the rare event you need the development version from GitHub, use the following.
{r}
library(devtools)
BiocManager::install("drisso/mbkmeans")
Owner
- Name: Davide Risso
- Login: drisso
- Kind: user
- Location: New York, NY
- Company: Weill Cornell Medicine
- Website: drisso.github.io
- Repositories: 23
- Profile: https://github.com/drisso
GitHub Events
Total
- Watch event: 1
- Fork event: 1
Last Year
- Watch event: 1
- Fork event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| YuweiNi45 | y****5@g****m | 152 |
| Davide Risso | r****e@g****m | 99 |
| Elizabeth Purdom | e****m@s****u | 36 |
| Davide Risso | d****2@m****u | 24 |
| Stephanie Hicks | s****s@g****m | 16 |
| Nitesh Turaga | n****a@g****m | 12 |
| Stephanie Hicks | s****s@S****t | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: over 1 year ago
All Time
- Total issues: 18
- Total pull requests: 1
- Average time to close issues: 5 months
- Average time to close pull requests: 9 days
- Total issue authors: 8
- Total pull request authors: 1
- Average comments per issue: 1.72
- Average comments per pull request: 3.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- drisso (11)
- robertamezquita (1)
- JaneChik (1)
- epurdom (1)
- ruoxi430 (1)
- const-ae (1)
- stephaniehicks (1)
- mpadge (1)
Pull Request Authors
- drisso (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- R >= 3.6 depends
- BiocParallel * imports
- ClusterR * imports
- DelayedArray * imports
- Matrix * imports
- Rcpp * imports
- S4Vectors * imports
- SingleCellExperiment * imports
- SummarizedExperiment * imports
- benchmarkme * imports
- methods * imports
- BiocStyle * suggests
- DelayedMatrixStats * suggests
- HDF5Array * suggests
- Rhdf5lib * suggests
- TENxPBMCData * suggests
- beachmat * suggests
- bluster * suggests
- knitr * suggests
- rmarkdown * suggests
- scater * suggests
- testthat * suggests