Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
✓Committers with academic emails
2 of 11 committers (18.2%) from academic institutions -
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (9.9%) to scientific vocabulary
Last synced: 10 months ago
·
JSON representation
Repository
Python Flow Cytometry Calibration Library
Basic Info
Statistics
- Stars: 50
- Watchers: 2
- Forks: 23
- Open Issues: 43
- Releases: 18
Created about 11 years ago
· Last pushed about 1 year ago
Metadata Files
Readme
License
README.rst
=========== ``FlowCal`` =========== ``FlowCal`` is a library for processing and analyzing flow cytometry data in Python. It features: * Extraction of Flow Cytometry Standard (FCS) files into numpy array-like structures * Traditional and non-standard gating, including automatic density-based two-dimensional gating. * Traditional transformation functions, such as exponentiation. * Analysis of calibration beads data, standard curve generation, and transformation to absolute units (Molecules of Equivalent Fluorophore, MEF). * Plotting, including generation of histograms, density plots and scatter plots. * A user-fiendly Excel UI to gate, transform, plot, and generate statistics from a list of flow cytometry samples in a simple fashion. Documentation ============= The official documentation can be found in https://flowcal.readthedocs.io. Here you will find installation instructions, tutorials, and more. Report Bugs =========== The official way to report a bug is through the issue tracker on github (https://github.com/taborlab/FlowCal/issues). Try to be as explicit as possible when describing your issue. Ideally, a set of instructions to reproduce the error should be provided, together with the version of all the relevant packages you are using. Request Features ================ Features can also be requested through the issue tracker on github. Try to be as descriptive as possible about the desired feature.
Owner
- Name: taborlab
- Login: taborlab
- Kind: organization
- Repositories: 6
- Profile: https://github.com/taborlab
GitHub Events
Total
- Create event: 1
- Release event: 1
- Issues event: 2
- Watch event: 2
- Issue comment event: 2
- Push event: 2
- Pull request event: 5
- Fork event: 1
Last Year
- Create event: 1
- Release event: 1
- Issues event: 2
- Watch event: 2
- Issue comment event: 2
- Push event: 2
- Pull request event: 5
- Fork event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Sebastian M. Castillo Hair | c****r@g****m | 687 |
| John T. Sexton | j****n@r****u | 111 |
| John T. Sexton | s****t@g****m | 69 |
| Brian Landry | b****y@g****m | 30 |
| Brian Landry | g****2@g****m | 6 |
| unknown | o****n@g****m | 5 |
| Lucas Hartsough | l****h@r****u | 3 |
| Xida Ren | c****n@g****m | 3 |
| abawchen | a****n@g****m | 3 |
| Felix Ekness | f****s@F****l | 2 |
| Felix Ekness | f****s@g****m | 1 |
Committer Domains (Top 20 + Academic)
rice.edu: 2
Issues and Pull Requests
Last synced: almost 2 years ago
All Time
- Total issues: 58
- Total pull requests: 46
- Average time to close issues: 11 months
- Average time to close pull requests: 2 months
- Total issue authors: 17
- Total pull request authors: 9
- Average comments per issue: 2.34
- Average comments per pull request: 4.13
- Merged pull requests: 39
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 3
- Average time to close issues: N/A
- Average time to close pull requests: 2 months
- Issue authors: 1
- Pull request authors: 2
- Average comments per issue: 3.0
- Average comments per pull request: 0.0
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- castillohair (22)
- JS3xton (19)
- ppreshant (2)
- felixekn (2)
- shuvadeep (1)
- abawchen (1)
- Anonymous62-bug (1)
- sinnamone (1)
- lin1996-ux (1)
- aromanillos (1)
- ethanj801 (1)
- MHunt-tools (1)
- chofski (1)
- kaekae124 (1)
- JJSong0805 (1)
Pull Request Authors
- castillohair (21)
- JS3xton (17)
- MHunt-tools (4)
- ym3141 (3)
- felixekn (1)
- SynbioLucas (1)
- djhaller (1)
- renxida (1)
- JJSong0805 (1)
- abawchen (1)
Top Labels
Issue Labels
plotting (13)
Excel UI (12)
deprecation (11)
bug (9)
gating/transformation/mef (9)
wishlist (9)
installation (5)
data object (4)
documentation (4)
question (3)
compensation (2)
tests (1)
Pull Request Labels
Excel UI (14)
plotting (11)
deprecation (8)
gating/transformation/mef (4)
bug (4)
documentation (4)
tests (2)
compensation (1)
installation (1)
data object (1)
Packages
- Total packages: 1
-
Total downloads:
- pypi 369 last-month
- Total dependent packages: 0
- Total dependent repositories: 2
- Total versions: 12
- Total maintainers: 2
pypi.org: flowcal
Flow Cytometry Calibration Library
- Homepage: https://github.com/taborlab/FlowCal
- Documentation: https://flowcal.readthedocs.io/
- License: MIT
-
Latest release: 1.3.1
published about 1 year ago
Rankings
Forks count: 8.1%
Stargazers count: 9.7%
Dependent packages count: 10.0%
Average: 10.2%
Downloads: 11.5%
Dependent repos count: 11.6%
Maintainers (2)
Last synced:
11 months ago
Dependencies
doc/requirements.txt
pypi
- numpydoc >=0.7.0
- pillow >=6.2.0
requirements.txt
pypi
- matplotlib >=2.0.0
- numpy >=1.9.0
- openpyxl >=2.2.0
- packaging >=16.8
- pandas >=0.23.0
- scikit-image >=0.10.0
- scikit-learn >=0.16.0
- scipy >=0.19.0
- six >=1.10.0
- xlrd >=0.9.2,<2.0.0
setup.py
pypi
- matplotlib >=2.0.0
- numpy >=1.9.0
- openpyxl >=2.2.0
- packaging >=16.8
- pandas >=0.23.0
- scikit-image >=0.10.0
- scikit-learn >=0.16.0
- scipy >=0.19.0
- six >=1.10.0
- xlrd >=0.9.2,<2.0.0