flowkit - 1.2.3

API: Add filename_as_id kwarg option to Sample constructor to set the id attribute from the FCS file name (as it is currently on the filesystem) (see #236). BUGFIX: Fix possible None value for Sample id attribute (see #237).

- Python
Published by whitews about 1 year ago

flowkit - 1.2.2

BUGFIX: Fixed issue where renaming a gate with children can result in a GateReferenceError (see #231)

- Python
Published by whitews about 1 year ago

flowkit - 1.2.1

BUGFIX: Fixes regression in loading resources, dropping pkg_resources and using importlib (thanks to @tristan-ranff for PR #224)

- Python
Published by whitews over 1 year ago

flowkit - 1.2.0

FlowKit 1.2.0 is out! Major updates include support for Boolean gates in FlowJo workspaces, renaming Sample channels and making the API more user-friendly. Thanks to everyone who contributed to this release, keep the bug reports and suggestions coming!

New features: * Workspace class now supports Boolean gates when parsing a FlowJo workspace (see #179). * Added get_keywords method to Workspace for getting sample keywords stored in a FlowJo workspace (see #210). * Workspace method get_gate_events now supports source kwarg to control pre-processing of returned events (see #196). * Session & GatingStrategy classes now support renaming gates via the rename_gate method (see @219). * Session & GatingStrategy classes now support removing custom sample gates via the sample_id kwarg in the remove_gate method (see #221). * Sample class now supports renaming channels via a new rename_channel method (see #198). * Sample class methods get_events, get_channel_events and as_dataframe support event_mask kwarg for filtering events using a Boolean array (see #218). * Sample class method as_dataframe supports new col_multi_index option to control column index type. * Matrix class now supports comparison operator for determining if 2 Matrix instances are the same (see #200). * New utils module function generate_transforms to generate a set of transforms for a Sample (see #162).

API changes: * Transform class: removed id attribute. This allows more convenient use of independently using transforms outside of a GatingStrategy (see #191).
* GatingStrategy class: added transformid arg to `addtransformmethod. * Session class: added transform_id arg toaddtransformmethod. * Workspace class:gettransformsnow returns a dictionary LUT of transform IDs and transform instances. * Matrix class: removedidattribute. This allows more convenient use of independently using matrices outside of a GatingStrategy (see #199). * Session class:getcompmatrices` now returns a dictionary LUT of matrix IDs and Matrix instances. * GatingResults class: the 'level' column of the report is now indexed at 0 (for root level).

Bug fixes: * Ensure exporting of QuadrantGate raises NotImplementedError (see #209). * Fixed plot_scatter error with 0 or 1 points (and 2 points with extent) (see #197). * Better error for invalid gate names '.' & '..' (see #220).

Documentation: * Added more informative docstrings for transforms * Testing code reorganized to factor constants to new test config file (Thanks @ksebby for PR #213).

Dependencies: * Drops Python 3.8 support (EOL as of Oct 2024). * Updated dependency versions for compatibility w/ Python 3.9 - 3.12 (see requirements.txt for details).

- Python
Published by whitews over 1 year ago

flowkit - 1.1.2

• BUGFIX: Fix typo in Matrix.fluorochromes attribute. Thanks to @okolupaev for reporting #206!

- Python
Published by whitews over 1 year ago

flowkit - 1.1.1

• BUGFIX: Fix ModuleNotFoundError for pkg_resources package in newer Python versions. Now using importlib when available for loading non-code resources. Thanks to @tristan-ranff for PR #192!

- Python
Published by whitews almost 2 years ago

flowkit - 1.1.0

Hey FlowKit community! Lots of changes in this release, including support for Python 3.11 & 3.12. The major updates: we've moved to a src based structure using pyproject.toml and finally converted all plotting functions to Bokeh (dropping matplotlib and Seaborn as requirements). Read the notes below for all the changes.

Special thanks to @hbhargava7 and @laserson for their contributions to this release!

New features:

• New utility function read_multi_dataset_fcs for reading FCS files with multiple data sets (returns a list of Sample instances).
• Workspace class now has an option to load FCS files from the URI parameter embedded in the WSP file (Many thanks to @hbhargava7 for PR #168).
• Sample.plot_scatter_matrix now displays histograms along the diagonal (Thanks @laserson for the suggestion in #169).
• Exporting FlowJo 10 workspaces now supports the WSPBiexTransform.
• Sample.plot_scatter adds event_mask option to filter the plotted events.
• Sample.plot_contours & Sample.plot_channel methods now use Bokeh.
• Custom heatmap color palette was improved (it's subtle but has better visual contrast between density levels).

API changes:

• Sample.plot_histogram method adds data_min, data_max, and x_range kwargs for filtering data ranges and controlling the view range.
• Removed argument ignore_transforms in parse_wsp utility function.
• Transforms from a GatingML document are no longer imported as undocumented "GML" sub-classes, instead using the documented Transform sub-classes.
• Added kwarg gate_path to plot_scatter method in both Session & Workspace.
• sample_id argument now required for GatingStrategy.is_custom_gate method.
• Rename plot_scatter argument highlight_indices to highlight_mask (since it takes a Boolean array and not a list of indices).
• plot_scatter argument dim_ids split to x_label & y_label for specifying axis labels.
• plot_gate argument dim_ids split to x_label & y_label for specifying axis labels.

Bug fixes:

• Fixed KeyError in Workspace.summary method when a sample has no gates (see #155).
• Fixed WSP export of "range" RectangleGate instances (see #157).
• Fix ValueError thrown when compensating a Sample specifying null channels via null_channel_list (see #175).
• Fix Session.plot_scatter method where mixed compensations are specified for x & y channels (rare).

Documentation:

• Switched to ReadTheDocs theme for documentation.
• Clarify docstrings for null channel usage (see Sample & Matrix constructor docs).
• All notebooks validated and updated for the new release.

Dependencies:

• Dropped support for Python 3.7, added support for Python 3.11 & 3.12.
• FlowIO updated to >=1.3.0,<1.4
• FlowUtils updated to >=1.1.0,<1.2
• Matplotlib & Seaborn removed as dependencies. All plotting now uses the Bokeh library (>=3.1).
• Pandas updated to >=2.0
• Added new dependency contourpy (the library matplotlib uses).
• Other dependency minimum versions updated for Python 3.8 - 3.12 support (See requirements.txt for details).

- Python
Published by whitews almost 2 years ago

flowkit - 1.0.1

BUGFIX: GatingStrategy instances using gate dimensions referencing built-in FCS compensation would return uncompensated events. This scenario would occur for GatingML 2.0 documents where the reserved 'FCS' value was used to reference the built-in FCS compensation matrix defined in the metadata keywords $SPILLOVER or $SPILL. Special thanks to @strategist333 for finding this issue and submitting PR #153.

- Python
Published by whitews almost 3 years ago

flowkit - 1.0.0

Version 1.0.0 is a major milestone for the FlowKit project. This release adds support for custom sample gates in FlowJo 10 workspaces. As a major release, this version has significant API changes. Please read the release notes below and review the documentation for all the API changes.

New features: * New dedicated Workspace class for importing FlowJo 10 workspaces. This class is essentially a read-only class for easily importing & extracting gating information from .wsp files. * Importing .wsp files now supports 'eventsInside' flag for FlowJo gates (see #135) * Session & GatingStrategy classes now support custom gates by specifying a sample_id when adding a gate to the gate tree. * Session & GatingStrategy classes now support removing gates from the gate tree via a new remove_gate method. The method includes an option to retain downstream (descendant) gates. * Sample class adds method get_index_sorted_locations for FACs Diva index sorted files (see #112) * Sample class adds id attribute, allowing identification of samples created from NumPy arrays or pandas DataFrames. * Sample class supports sorting (samples will be sorted by id attribute) * Sample class constructor supports new arguments for controlling behavior in cases where there is a discrepancy in the data offset location (see #136) * Sample method plot_scatter adds highlight_indices option for highlighting events using a Boolean array. * Transform classes now support comparison for determining if 2 transforms are equivalent (i.e. have the same parameters).

Removed features:

• Removed calculate_compensation_from_beads, the function was moved to the flowkit_extras package (see #123)
• Session class no longer imports FlowJo 10 workspaces, this functionality now lives in the dedicated Workspace class
• Session class no longer uses sample groups, simplifying the API. Sample groups were needed for FlowJo workspaces.

API changes:

• New exceptions module containing custom FlowKit exceptions and warnings. This module also imports FlowIO exceptions so users can import all of them from one source.
• Session method get_group_samples was removed. group_name option removed from all Session methods.
• Session and GatingStrategy method get_child_gates was removed. A new method get_child_gate_ids was added. Gate instances are only available via get_gate.
• Session and GatingStrategy method get_parent_gate was removed. A new method get_parent_gate_id was added. Gate instances are only available via get_gate.
• GatingStrategy now has a is_custom_gate method for determining whether a Gate ID, Sample ID combination has a custom gate or the template gate.
• Session & Sample plot_scatter methods now take an optional bin_width argument to control the smoothness of the color density
• Gate classes no longer take the parent_gate_name argument. Gate relationships are handled completely by the GatingStrategy class.
• Gate classes have a new get_dimension_ids for retrieving Dimension IDs.
• Vertex class was removed. PolygonGate vertices are now just tuples of floats.

Bug fixes: * Fix sample export of orig data for FCS files with data type int * Fixed case where adding gates directly under QuadrantGate was possible. Adding a child gate to a QuadrantGate directly is not allowed, they must be added a one of the Quadrant instances. * Fix parsing of FlowJo workspaces where a sample has no gate data. * Fixed color density in scatter plots to correct missing 1st bin & poor coloring for data sets with outliers (see #139)

Documentation: * Docstring for Sample method subsample_events corrected to reflect that the method does not return anything (see #129) * Top-level functions & exceptions were added to the documentation * All tutorial & advanced notebooks were updated for compatibility with the new API.

Dependencies: * FlowIO requirement updated to 1.1.1 * Removed statsmodels dependency (see #123) * Other dependency minimum versions updated for Python 3.7 - 3.10 support (See requirements.txt for details)

- Python
Published by whitews almost 3 years ago

flowkit - 0.9.3

Patch release 0.9.3 * Fixes import issue where XMLSchemaParseError is raised if FlowKit is installed in paths containing special characters (see #106, #122)

- Python
Published by whitews over 3 years ago

flowkit - 0.9.2

Patch release 0.9.2 * Fixes parsing of ellipse gates in FlowJo 10 workspace files (see #120)

- Python
Published by whitews over 3 years ago

flowkit - 0.9.1

Dependencies:

• FlowIO requirement updated to v1.0.1 (fixes issue exporting some FCS files)

API changes:

• new GatingStrategy method findmatchinggate_paths to find gate paths given a gate name
• new Session method findmatchinggatepaths & getchildgateids

Bug fixes:

• Corrected error types (several instances of ValueError changed to TypeError)
• BUGFIX: Fixed issue where adding new gates to a Session where a WSP was imported would cause an error (issue #110)

Documentation:

• Several docstrings updated and fixed for ReadTheDocs
• Example notebooks moved to docs folder & added to ReadTheDocs

- Python
Published by whitews over 3 years ago

flowkit - 0.9.0

New features: * Support for Python 3.10 (drops support for Python 3.6) * All C extensions moved to FlowUtils (and FlowUtils now provides pre-built wheels - should avoid the need for a compiler for most users) * New function extract_wsp_sample_data to parse FlowJo 10 wsp & extract Sample metadata (keywords) to a Python dictionary * New GatingStrategy method get_max_depth to get max depth of gate tree * New Session method summary for a quick summary of what the session contains * Sample class now supports exporting new FCS files with metadata (#89)

API changes: * Sample attribute channel_lin_log removed, lin / log metadata now available as "pne" column in Sample.channels attribute * Sample class: export method has new kwarg include_metadata for including all key/value pairs in self.metadata in the output FCS file

Bug fixes: * Fixed typo in FCSSTANDARDKEYWORDS for 'date' keyword * Fixed parsing of FlowJo workspaces where sample groups have "gate-less" samples (#91) * Replace special quote characters that caused a UnicodeDecodeError on some Windows installs (#97)

Dependencies: * FlowIO requirement updated to 1.0.0 * FlowUtils requirement updated to 1.0.0 (with pre-built binaries for most platforms) * NumPy minimum requirement of 1.20 when using pre-built FlowUtils binaries (required for NumPy C API compatibility) * Fix deprecation warnings from Pandas 1.4 (squeeze kwarg removed from read_csv)

Acknowledgements: * Special thanks to @sbenz for help testing this release on arm64 Macs (Apple Silicon)

- Python
Published by whitews almost 4 years ago

flowkit - 0.8.2

• Sample Class
  • Error is raised when retrieving compensated or transformed events prior to applying a compensation matrix or a transform (used to issue just a warning)
  • plotscattermatrix argument order changed to be more consistent with other plot methods
• Session Class
  • Analyzing multiple samples using multiprocessing now uses a more conservative estimate of memory to avoid running out of system memory
• BUGFIX: Fixed failure to properly parse FlowJo workspaces containing an ellipse gate.
• Documentation was updated to include a table of contents with links to methods for the complex classes: Sample, GatingStrategy, GatingResults, & Session

- Python
Published by whitews over 4 years ago

flowkit - 0.8.1

• GatingResults get methods now accept a gate_path argument to disambiguate re-used gates
• BUGFIX: fixed issue parsing FlowJo 10 wsp files with reused gates that contain a child gate (issue #84)
• Suppressed output for analyzing Session samples when verbose=False
• Suppress FlowKit generated warnings when running tests

- Python
Published by whitews over 4 years ago

flowkit - 0.8.0

New features: * Support for Python 3.9 * FlowKit version now available via top-level attribute __version__ * GatingStrategy: * optimized processing order of gates to avoid re-processing * optional caching of pre-processed events to speed up processing of gates * Matrix class now has an inverse method * WSPBiexTransform now has an inverse method * Significant speed increase for parsing FlowJo 10 WSP files with lots of bi-ex transforms * Sample method plot_contour now has optional fill argument to created filled contours * Sample now re-applies a transform when Sample is given a new compensation * Analyzing samples in a Session using multiprocessing will now try to dynamically allocate CPUs based on available memory to avoid out of memory errors

Removed features: * Anomalous event detection removed from FlowKit, now lives in separate FlowQC project

API changes: * gates module: * All gate types now take a pandas DataFrame as input (possible to use gates independently now) * Sample class: * subsample argument added back to Sample constructor (better to have subsample ready for plot methods) * Sample plot methods (except histogram and plot channel) now default to subsample=True * The various methods for getting NumPy arrays of events are now encapsulated into the single get_events methods that takes a source argument (consistent w/ other Sample methods) * Method get_channel_data renamed to get_channel_events * Added option to cache original events, they are no longer stored by default (saves memory) * Attribute anomalous_indices renamed to flagged_indices, and now set by user for any purpose using set_flagged_events method * Attribute channels changed from a dictionary to a more readable pandas DataFrame * New plotting method plot_channel for plotting channel data with "events" as x-axis (similar to plotting vs Time) * GatingStrategy class: * gate_path is now always a tuple (not a list) * Uses of gate_id replaced with gate_name: a gate ID is a tuple of (gatename, gatepath) * Method get_gate_indices renamed to get_gate_membership (since it returns a boolean array) * Session class: * Plotting methods no longer analyze samples, analyze_samples method must be called prior * Method get_gate_indices renamed to get_gate_membership (since it returns a boolean array) * Dimension class * Attribute label renamed to id * Method get_gate now returns the containing QuadrantGate when a Quadrant ID is given * Function calculate_extent removed from public API (was never intended for external use)

Bug fixes: * Improved support for Windows * multiprocessing now working * fixed issue where parent gate results were not being properly retrieved, causing lots of re-processing * fixed memory leak in pointsinpolygon C extension (used for processing PolygonGate instances) * fixed issue in C extension code that would sometimes cause mis-allocation of NumPy array sizes

Documentation: * New & comprehensive tutorial notebook series for new FlowKit users * New notebook demonstrating how to create a custom Sample gate in a Session * More docstrings for classes and methods

Dependencies: * FlowIO requirement updated to 0.9.12 (significantly faster reading of FCS files) * FlowUtils requirement updated to 0.9.5 * new requirement networkx >= 2.3 * new requirement psutil ~= 5.8.0

- Python
Published by whitews over 4 years ago

flowkit - 0.7.0

New features: * It's now easier to assign multiple samples to a Session group * Session.assignsamples can take either a Sample ID or list of Sample IDs * Session.addsamples now takes an optional group argument for assigning to a group when loading Samples * New Session method get_wsp_gated_events for conveniently getting a list of DFs of compensated & transformed gated events * More informative error message when reloading the same samples (include file name in error message) * Transforms now support handling of 1-D data arrays

API changes: * Session: renamed method assign_sample to assign_samples now that it supports a list of sample IDs * Session methods get_sample_ids() & get_group_sample_ids() now have a loaded_only option to only return sample IDs of loaded samples * Session: method get_gate now has a sample_id option allowing retrieval of custom sample gates in a sample group's gating strategy

Bug fixes: * Eliminate Pandas PerformanceWarning when creating GatingResults instances (occurred when getting gate indices) * Fixed issue where Session.exportwsp fails to export rectangle gates that include transforms * Fixed issue where Session.getgroupsampleids() incorrectly reports samples as members when that are not part of that group * Test data and code are no longer included in packaged

Documentation: * Showcase exporting to wsp in replicate flowjo example notebook * More Session methods documented with docstrings * Cleaned up examples folder so it is easier for users to browse * New example notebooks for: * Demonstrating a comparison of clustering methods (Leiden vs Louvain) * Demonstrating dimension reduction on processed event data

Dependencies: * FlowUtils requirement updated to 0.9.4 * NumPy requirement updated to >=1.19 * Seaborn requirement updated to >=0.11 * Pandas requirement updated to >=1.1

- Python
Published by whitews over 4 years ago

flowkit - 0.6.2

BUGFIX: Fixed case where some transforms fail when given a 1-D numpy array of events (issue #71)

- Python
Published by whitews over 4 years ago

flowkit - Round and Round

New features:

• Experimental support for exporting FlowJo 10 workspace files (limited to single sample groups)
• Added support for FlowJo 10 biex transform
• Added inverse transform methods for most transformations
• implement ignore_transforms option for parsing FJ10 workspaces
• Sample.apply_transform supports customized transforms per channel via dictionary
• Create Sample instances from Pandas DataFrame w/MultiIndex columns
• Sample: store original events unprocessed

API changes:

• Sample: added attributes scatter_indices & time_index
• Sample: apply_transform method now has option to include scatter channels
• GatingStrategy: get_gate_ids now returns a list of tuples containing the gate ID & list of ancestors (gate path)
• GatingStrategy: new method get_root_gates for ...
• GatingStrategy: simplify GatingStrategy methods for retrieving gates,
• GatingStrategy: added new convenience method getchildgates
• Session: new method get_group_comp_matrices
• Session: all method arguments referencing a sample group name are now consistent ('group_name')
• Session: new method to get all gate IDs & paths for a sample
• Session: new method get_group_transforms for retrieving group transformations
• Session: new method export_wsp for exporting a sample group's gating strategy as a FlowJo 10 workspace
• Session: new methods for retrieving Sample specific comp matrices & transforms for a group
• Session: new method for retrieving gated events for a Sample
• Compensation utility functions moved to FlowUtils
• make sample utils functions public
• expose calculate_extent function for flowkit-extras

Bug fixes:

• Clearer error message when requesting sub-sampled events from get_channel_data when Sample has not been sub-sampled
• Fixed issue where gain was incorrectly applied to time channel data
• Allow re-use of gates on different branches at any level
• Applying re-used gates requires the Gate instance to know the full path
• Fixed plot_scatter for cases where the event arrays are empty
• Session.getgroupsamples() now only returns loaded samples

Documentation:

• Added more docstrings for Sample, Session, Transform methods
• Updated tutorial notebooks
• Added notebook for calculating mean fluorescence intensity (MFI) per channel for gated populations

Dependencies:

• Support for Python 3.8
• Removed MulticoreTSNE dependency
• Removed sklearn dependency
• Most transform implementations moved to FlowUtils

- Python
Published by whitews almost 5 years ago

flowkit - Branching Out

New features:

• GatingStrategy & Session classes now support re-using gate IDs in different gate hierarchy branches (i.e. having a child gate "IFNg+" under both a "CD4+" and "CD8+" gate)
• Added support for FlowJo 10 ellipsoid gates
• Plotting of gates in Session class now plots only events from the parent gate
• Added plotting of Quadrant gates
• Added bokeh hover tool to scatter plots
• Re-enabled multiprocessing by default for faster processing of gates in a Session
• Updated plot colormap for better contrast with gate boundaries

API changes:

• Major cleanup of public/private modules for cleaner API
• New Quadrant class for cleaner API when creating QuadrantGate instances
• New wsp_transforms module containing FlowJo specific Transform sub-classes
• GatingStrategy, Session - added get_transform and get_comp_matrix methods
• GatingStrategy, Session - added gate_path kwarg for ambiguous gates in get_gate & get_gate_indices
• Session: add sample_id option to analyze_samples to process a single Sample
• Session: added ignore_missing_files option to import_flowjo_workspace method for suppressing warnings about missing FCS files when importing a FlowJo WSP file
• Gate class - added get_dimension method
• Sample: rename Sample method to as_dataframe (consistent with Matrix class), & added options to re-order and rename columns in output DataFrame
• Sample: 'fcs' is no longer the default ID when adding a compensation matrix (it is reserved for the embedded comp matrix from the spill metadata value)
• Matrix: fluorochromes argument is now optional
• Matrix: new method as_dataframe to get comp matrix as a Pandas DataFrame
• Dimension: 'uncompensated' is now the default value when creating Dimension instances

Bug fixes:

• Properly support time channel data when timestep keyword is present in FCS metadata
• Fixed display of plotted ellipses (corrected angle)
• Fixed parsing of compensated dimension references in FlowJo WSP files
• Fixed import of CSV compensation files with commented header
• Fixed creation of Sample instances from Pandas DataFrame
• Fixed parsing of FlowJo gate IDs for some WSP variants

Documentation:

• Documentation now on ReadTheDocs
• Many more docstrings for classes and methods
• Added contribution guidelines
• New tutorial notebook to demonstrate loading of FlowJo workspaces & programmatically replicating the gating strategy
• New example notebook showing compensation and Matrix class usage

- Python
Published by whitews over 5 years ago

flowkit - Community Service

New features:

• Plotting of gates in Session class: limited to polygon, rectangle, range, and ellipse gates.
• Session now supports importing FlowJo workspace files, though support is limited to WSP files with linear, log, logicle transforms, and only polygon & rectangle gates.
• Session class now supports multiple gating strategies via the implementation of "sample groups", similar to how FlowJo works.
• Sample class now allows retrieving events as Pandas DataFrames, with multi-index columns as the PnN and PnS labels

API changes:

• Session: add get methods for sample IDs, sample groups, and gate IDs
• More consistent handling of Matrix class as input to compensation methods
• Expose parsegatingxml function
• Expose plot_channel function

Bug fixes:

• Handle case where a Sample has no keyword for original filename
• Fix re-subsampling after applying Sample filters
• Ensure correct fluoro order when parsing a comp matrix from a CSV file

- Python
Published by whitews almost 6 years ago

flowkit - Build Gates - 0.3.2

API changes:

• New Session method for adding samples after a Session instance has been created

Bug Fixes:

• Sample export failed to create file

- Python
Published by whitews about 6 years ago

flowkit - Build Gates

New features:

• Programmatically add gates, transforms, and compensation matrices to a GatingStrategy
• Export a GatingML 2.0 compliant document from a GatingStrategy

API improvements:

• Gate sub-classes no longer require a GatingStrategy in their constructor, allowing re-use of instantiated gates
• New convenience methods in the Session class for getting parent gates and creating gates, transforms, and comp matrices
• Better x & y axis labels in scatter plot (includes marker names, if available)

Bug fixes:

• Fixed bug in GatingStrategy method getgateby_reference where an existing QuadrantGate could not be found
• Fixed bug in parsing spillover matrix from a $SPILL keyword value of an FCS file

- Python
Published by whitews over 6 years ago

flowkit - In Session

Multiple API changes, significant performance improvements, and bug fixes for Windows.

• New GatingResults class for reporting gating statistics
• Significant performance improvements in calculating gated events
  • Support for multi-processing for evaluating gates
  • New C-extension for calculating events in PolygonGates
• Cleaner API for user interaction
• New Session class for combining multiple Samples with a GatingStrategy
• tSNE support for multiple Samples in a Session
• Automatic generation of a compensation matrix from a set of bead files
• Simplified API for exporting Sample events
• Multiple bug fixes for Windows

- Python
Published by whitews over 6 years ago

flowkit - Gatin' 2: Electric Boogaloo

Now fully compliant with the GatingML 2.0 specification.

• Full support for GatingML Quadrant gate
• Now supports Ellipsoid gates of any dimension (not just simple 2-D ellipses)
• Sample class now takes any Transform sub-class, consistent with GatingStrategy transforms
• A new fancy logo!
• BUGFIX: fixed issue where the HyperlogTransform would fail on 2-D arrays

- Python
Published by whitews about 7 years ago

flowkit - Hello, World!

1st release of FlowKit for flow cytometry analysis and visualization, featuring GatingML 2.0 support and support for reading and exporting FCS data

- Python
Published by whitews about 7 years ago