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barcode

NGS barcode design and validation.

https://github.com/jfjlaros/barcode

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.8%) to scientific vocabulary

Keywords

barcode edit-distance hamming-distance levenshtein-distance ngs
Last synced: 6 months ago · JSON representation

Repository

NGS barcode design and validation.

Basic Info
  • Host: GitHub
  • Owner: jfjlaros
  • License: mit
  • Language: Python
  • Default Branch: master
  • Homepage:
  • Size: 53.7 KB
Statistics
  • Stars: 5
  • Watchers: 1
  • Forks: 2
  • Open Issues: 0
  • Releases: 5
Topics
barcode edit-distance hamming-distance levenshtein-distance ngs
Created almost 8 years ago · Last pushed about 2 years ago
Metadata Files
Readme Contributing License Code of conduct

README.rst 

Barcode: Design and validate NGS barcodes
=========================================

.. image:: https://img.shields.io/github/last-commit/jfjlaros/barcode.svg
   :target: https://github.com/jfjlaros/barcode/graphs/commit-activity
.. image:: https://github.com/jfjlaros/barcode/actions/workflows/python-package.yml/badge.svg
   :target: https://github.com/jfjlaros/barcode/actions/workflows/python-package.yml
.. image:: https://readthedocs.org/projects/barcode/badge/?version=latest
   :target: https://barcode.readthedocs.io/en/latest
.. image:: https://img.shields.io/github/release-date/jfjlaros/barcode.svg
   :target: https://github.com/jfjlaros/barcode/releases
.. image:: https://img.shields.io/github/release/jfjlaros/barcode.svg
   :target: https://github.com/jfjlaros/barcode/releases
.. image:: https://img.shields.io/pypi/v/barcode.svg
   :target: https://pypi.org/project/barcode/
.. image:: https://img.shields.io/github/languages/code-size/jfjlaros/barcode.svg
   :target: https://github.com/jfjlaros/barcode
.. image:: https://img.shields.io/github/languages/count/jfjlaros/barcode.svg
   :target: https://github.com/jfjlaros/barcode
.. image:: https://img.shields.io/github/languages/top/jfjlaros/barcode.svg
   :target: https://github.com/jfjlaros/barcode
.. image:: https://img.shields.io/github/license/jfjlaros/barcode.svg
   :target: https://raw.githubusercontent.com/jfjlaros/barcode/master/LICENSE.md

----

Barcode is a program for the design and validation of sets of sequencing
barcodes.

Please see ReadTheDocs_ for the latest documentation.


.. _ReadTheDocs: https://barcode.readthedocs.io/en/latest/index.html

Owner

  • Name: Jeroen F.J. Laros
  • Login: jfjlaros
  • Kind: user
  • Company: @RIVM-syso @LUMC

GitHub Events

Total
Last Year

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 33
  • Total Committers: 3
  • Avg Commits per committer: 11.0
  • Development Distribution Score (DDS): 0.394
Past Year
  • Commits: 3
  • Committers: 1
  • Avg Commits per committer: 3.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Jeroen F.J. Laros j****s@f****l 20
J.F.J. Laros j****s@l****l 8
J.F.J. Laros J****s@l****l 5
Committer Domains (Top 20 + Academic)
lumc.nl: 2 fixedpoint.nl: 1

Issues and Pull Requests

Last synced: 8 months ago

All Time
  • Total issues: 5
  • Total pull requests: 0
  • Average time to close issues: about 21 hours
  • Average time to close pull requests: N/A
  • Total issue authors: 4
  • Total pull request authors: 0
  • Average comments per issue: 1.6
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • mmokrejs (2)
  • PhilippFW (1)
  • hemmond (1)
  • heliomcp (1)
Pull Request Authors
Top Labels
Issue Labels
bug (3) question (1) invalid (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 11,665 last-month
  • Total docker downloads: 174
  • Total dependent packages: 8
  • Total dependent repositories: 22
  • Total versions: 13
  • Total maintainers: 1
pypi.org: barcode

Design and test NGS barcodes.

  • Versions: 13
  • Dependent Packages: 8
  • Dependent Repositories: 22
  • Downloads: 11,665 Last month
  • Docker Downloads: 174
Rankings
Dependent packages count: 1.1%
Dependent repos count: 3.1%
Docker downloads count: 3.4%
Downloads: 4.0%
Average: 9.9%
Forks count: 22.6%
Stargazers count: 25.0%
Maintainers (1)
jfjlaros
Last synced: 7 months ago

Dependencies

docs/requirements.txt pypi
  • docutils ==0.17.1
  • sphinx-argparse *
  • sphinx-autodoc-typehints *
.github/workflows/python-package.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v3 composite
setup.py pypi