Science Score: 49.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 2 DOI reference(s) in README -
○Academic publication links
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✓Committers with academic emails
2 of 13 committers (15.4%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (3.1%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Functionality for CNV analysis
Basic Info
- Host: GitHub
- Owner: waldronlab
- Language: R
- Default Branch: devel
- Homepage: https://bioconductor.org/packages/CNVRanger
- Size: 15.9 MB
Statistics
- Stars: 8
- Watchers: 5
- Forks: 7
- Open Issues: 14
- Releases: 0
Topics
Metadata Files
README.md
CNVRanger 
Summarization and expression/phenotype association analysis for CNV ranges
Bioinformatics publication: https://doi.org/10.1093/bioinformatics/btz632
Bioconductor package: https://bioconductor.org/packages/CNVRanger
CNV workshop: https://github.com/waldronlab/CNVWorkshop
The CNVRanger package implements a comprehensive tool suite for CNV analysis. This includes functionality for summarizing individual CNV calls across a population, assessing overlap with functional genomic regions, and association analysis with gene expression and quantitative phenotypes.
Owner
- Name: Waldron Lab at the CUNY SPH
- Login: waldronlab
- Kind: organization
- Email: Levi.Waldron@sph.cuny.edu
- Location: New York, NY, USA
- Website: https://waldronlab.io/
- Twitter: LeviWaldron1
- Repositories: 93
- Profile: https://github.com/waldronlab
Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City
GitHub Events
Total
- Issues event: 1
- Watch event: 2
- Delete event: 2
- Push event: 11
- Pull request event: 1
- Create event: 3
Last Year
- Issues event: 1
- Watch event: 2
- Delete event: 2
- Push event: 11
- Pull request event: 1
- Create event: 3
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| lgeistlinger | l****r@b****e | 120 |
| viniciushdasilva | v****s@h****m | 41 |
| viniciushdasilva | 3****a | 27 |
| lgeistlinger | l****r@g****m | 14 |
| Nitesh Turaga | n****a@g****m | 14 |
| LiNk-NY | m****9@g****m | 5 |
| J Wokaty | j****y@s****u | 4 |
| Vinicius Henrique da Silva | v****a@b****r | 3 |
| J Wokaty | j****y | 2 |
| Hervé Pagès | h****s@f****g | 2 |
| Levi Waldron | l****h@g****m | 1 |
| lgeistlinger | l****r@s****u | 1 |
| Vinicius Henrique da Silva | v****a@s****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 7 months ago
All Time
- Total issues: 1
- Total pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: 2 days
- Total issue authors: 1
- Total pull request authors: 1
- Average comments per issue: 0.0
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: 2 days
- Issue authors: 1
- Pull request authors: 1
- Average comments per issue: 0.0
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- stacyhung (1)
- FL512 (1)
Pull Request Authors
- bd4everyone (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- GenomicRanges * depends
- RaggedExperiment * depends
- BiocGenerics * imports
- BiocParallel * imports
- GDSArray * imports
- GenomeInfoDb * imports
- IRanges * imports
- S4Vectors * imports
- SNPRelate * imports
- SummarizedExperiment * imports
- data.table * imports
- edgeR * imports
- gdsfmt * imports
- grDevices * imports
- lattice * imports
- limma * imports
- methods * imports
- plyr * imports
- qqman * imports
- rappdirs * imports
- reshape2 * imports
- stats * imports
- utils * imports
- AnnotationHub * suggests
- BSgenome.Btaurus.UCSC.bosTau6.masked * suggests
- BiocStyle * suggests
- ComplexHeatmap * suggests
- Gviz * suggests
- MultiAssayExperiment * suggests
- TCGAutils * suggests
- curatedTCGAData * suggests
- ensembldb * suggests
- grid * suggests
- knitr * suggests
- regioneR * suggests
- rmarkdown * suggests