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gemini

GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens

https://github.com/sellerslab/gemini

Science Score: 20.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ✓
    Committers with academic emails
    1 of 3 committers (33.3%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (10.7%) to scientific vocabulary

Keywords

computational-biology crispr genetic-interactions
Last synced: 6 months ago · JSON representation

Repository

GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens

Basic Info
  • Host: GitHub
  • Owner: sellerslab
  • License: bsd-3-clause
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 4.35 MB
Statistics
  • Stars: 15
  • Watchers: 4
  • Forks: 3
  • Open Issues: 1
  • Releases: 0
Topics
computational-biology crispr genetic-interactions
Created almost 7 years ago · Last pushed about 3 years ago
Metadata Files
Readme License

README.Rmd 

---
output: github_document
---


[![DOI](https://zenodo.org/badge/175870293.svg)](https://zenodo.org/badge/latestdoi/175870293) [![License](https://img.shields.io/badge/License-BSD%203--Clause-orange.svg)](https://opensource.org/licenses/BSD-3-Clause)

```{r setup, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```
# gemini

The `gemini` package allows users to analyze combinatorial CRISPR screens as described in Zamanighomi et al. ?.

## Installation
To install the latest development version of `gemini`, use the [`devtools`]("https://github.com/r-lib/devtools") package as follows:
```{r, eval = F}
devtools::install_github(repo = "sellerslab/gemini", build_vignettes = TRUE)
```

You can (eventually) install the stable release version of gemini from [Bioconductor](https://www.bioconductor.org/) with:

```{r, eval = F}
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("gemini")
```

## Details
See the vignette for usage instructions:
```{r}
vignette("gemini-quickstart", package = "gemini")
```

Owner

  • Name: Sellers Lab
  • Login: sellerslab
  • Kind: organization

Computational projects of the Sellers Lab at the Broad Institute

GitHub Events

Total
  • Watch event: 1
  • Fork event: 1
Last Year
  • Watch event: 1
  • Fork event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 45
  • Total Committers: 3
  • Avg Commits per committer: 15.0
  • Development Distribution Score (DDS): 0.4
Past Year
  • Commits: 1
  • Committers: 1
  • Avg Commits per committer: 1.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Sidharth Jain s****n@b****g 27
Sidharth Jain s****n@g****m 12
Nitesh Turaga n****a@g****m 6
Committer Domains (Top 20 + Academic)
broadinstitute.org: 1

Dependencies

DESCRIPTION cran
  • R >= 4.1.0 depends
  • dplyr * imports
  • ggplot2 * imports
  • grDevices * imports
  • magrittr * imports
  • mixtools * imports
  • parallel * imports
  • pbmcapply * imports
  • scales * imports
  • stats * imports
  • utils * imports
  • knitr * suggests
  • rmarkdown * suggests
  • testthat * suggests