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meshr

meshr is an R package to perform MeSH-Enrichment analysis and then annotate the results.

https://github.com/rikenbit/meshr

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 4 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: wiley.com
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.0%) to scientific vocabulary
Last synced: 9 months ago · JSON representation

Repository

meshr is an R package to perform MeSH-Enrichment analysis and then annotate the results.

Basic Info
  • Host: GitHub
  • Owner: rikenbit
  • Language: R
  • Default Branch: master
  • Size: 74.8 MB
Statistics
  • Stars: 0
  • Watchers: 7
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 11 years ago · Last pushed over 3 years ago
Metadata Files
Readme

README.md

meshr

Tools for conducting enrichment analysis of MeSH. Release version is available from Bioconductor

Installation

~~~~ git clone https://github.com/rikenbit/meshr/ cd meshr R CMD INSTALL meshr ~~~~

References

Tsuyuzaki K., Morota G., Ishii M., Nakazato T., Miyazaki S., Nikaido I., MeSH ORA framework: R/Bioconductor packages to support MeSH over-representation analysis, BMC Bioinformatics, 2015;16(45)

Morota G., Peñagaricano F., Petersen, J. L., Ciobanu, D. C., Tsuyuzaki, K., Nikaido, I., An application of MeSH enrichment analysis in livestock, Animal Genetics, 2015;DOI: 10.1111/age.12307

Amorim S. T., Tsuyuzaki K. Nikaido, I. Morota G., Improved MeSH analysis software tools for farm animals, Animal Genetics, 2021; DOI: 10.1111/age.13159

License

Copyright (c) 2015 Koki Tsuyuzaki and RIKEN Bioinformatics Research Unit Released under the Artistic License 2.0.

Authors

  • Koki Tsuyuzaki
  • Manabu Ishii
  • Itoshi Nikaido

Owner

  • Name: RIKEN BiT
  • Login: rikenbit
  • Kind: organization
  • Location: Japan

Laboratory for Bioinformatics Research, RIKEN Center for Biosystems Dynamics Research

GitHub Events

Total
Last Year

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 34
  • Total Committers: 2
  • Avg Commits per committer: 17.0
  • Development Distribution Score (DDS): 0.029
Past Year
  • Commits: 2
  • Committers: 2
  • Avg Commits per committer: 1.0
  • Development Distribution Score (DDS): 0.5
Top Committers
Name Email Commits
kokitsuyuzaki k****r@h****p 33
露崎弘毅 k****i@d****p 1
Committer Domains (Top 20 + Academic)
dhcp32-179.cdb.riken.go.jp: 1 hotmail.co.jp: 1

Dependencies

DESCRIPTION cran
  • R >= 4.1.0 depends
  • BiocGenerics * imports
  • BiocStyle * imports
  • Category * imports
  • MeSHDbi * imports
  • RSQLite * imports
  • S4Vectors * imports
  • fdrtool * imports
  • knitr * imports
  • markdown * imports
  • methods * imports
  • rmarkdown * imports
  • stats * imports
  • utils * imports