Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic links in README
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✓Committers with academic emails
3 of 6 committers (50.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (1.3%) to scientific vocabulary
Keywords
cobrapy
constraint-based-modeling
protein-structure
structural-biology
structural-systems-biology
systems-biology
Last synced: 10 months ago
·
JSON representation
Repository
A Python framework for structural systems biology
Basic Info
- Host: GitHub
- Owner: SBRG
- License: mit
- Language: Python
- Default Branch: master
- Homepage: http://ssbio.readthedocs.io/en/latest/
- Size: 38.2 MB
Statistics
- Stars: 109
- Watchers: 16
- Forks: 28
- Open Issues: 30
- Releases: 0
Topics
cobrapy
constraint-based-modeling
protein-structure
structural-biology
structural-systems-biology
systems-biology
Created over 10 years ago
· Last pushed over 5 years ago
Owner
- Name: Systems Biology Research Group
- Login: SBRG
- Kind: organization
- Location: La Jolla
- Website: http://systemsbiology.ucsd.edu
- Repositories: 75
- Profile: https://github.com/SBRG
GitHub Events
Total
- Watch event: 3
- Fork event: 1
Last Year
- Watch event: 3
- Fork event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| nmih | n****h@u****u | 1,050 |
| nmih | n****h@l****m | 20 |
| Nathan Mih | n****h@g****m | 8 |
| Nathan Mih | n****h@e****u | 7 |
| vagrant | v****t@v****m | 2 |
| Laurence | l****g@e****u | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 12 months ago
All Time
- Total issues: 40
- Total pull requests: 17
- Average time to close issues: about 1 month
- Average time to close pull requests: less than a minute
- Total issue authors: 11
- Total pull request authors: 2
- Average comments per issue: 0.68
- Average comments per pull request: 0.0
- Merged pull requests: 16
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- nmih (26)
- bkellman (3)
- a-r-j (2)
- erolkavvas (2)
- ma-blaetke (1)
- miri-2000 (1)
- pvphaneuf (1)
- JoshuaMeyers (1)
- knowmili (1)
- kishor2019 (1)
Pull Request Authors
- nmih (16)
- JoshuaMeyers (1)
Top Labels
Issue Labels
bug (19)
enhancement (12)
wontfix (2)
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- pypi 74 last-month
- Total dependent packages: 0
- Total dependent repositories: 3
- Total versions: 20
- Total maintainers: 1
pypi.org: ssbio
Tools to enable structural systems biology
- Homepage: http://github.com/SBRG/ssbio
- Documentation: https://ssbio.readthedocs.io/
- License: MIT
-
Latest release: 0.9.9
published over 8 years ago
Rankings
Stargazers count: 7.3%
Forks count: 7.5%
Dependent repos count: 9.0%
Dependent packages count: 10.0%
Average: 11.3%
Downloads: 22.8%
Maintainers (1)
Last synced:
11 months ago
Dependencies
binder/requirements.txt
pypi
- ipywidgets ==7.0.0
- jupyter_contrib_nbextensions *
- nglview ==1.0
- requests *
- requests_cache ==0.4.13
- ssbio *
docs/requirements.txt
pypi
- ipykernel *
- nbsphinx *
- sphinx >=1.4
- sphinx_rtd_theme *
requirements.txt
pypi
- awesome-slugify *
- bcbio-gff *
- beautifulsoup4 ==4.5.3
- biopandas *
- biopython >=1.69
- bioservices *
- cobra >=0.6.1
- deprecation *
- ipywidgets ==7.0.0
- joblib *
- json-tricks >3.0
- lxml *
- matplotlib *
- mmtf-python *
- more_itertools *
- msgpack-python *
- nbsphinx *
- networkx *
- numpy *
- pandas *
- pytest *
- requests >=2.13.0
- scipy *
- seaborn *
- six *
- tqdm *
- xmltodict *