read5_ont - 1.2.8

Added

• __setstate__ and __getstate__ functions to make the reader objects pickable

Changed

• to new building system using pyproject.toml instead of setyp.py

- Python
Published by JannesSP 11 months ago

read5_ont - 1.2.5

updated to python 3.13

- Python
Published by JannesSP over 1 year ago

read5_ont - 1.2.5

• update python versions to 3.13

- Python
Published by JannesSP over 1 year ago

read5_ont - 1.2.4

Changed

Extend getPolyAStandardizedSignal - add mode change between median and mean - standardization parameters can be added as parameters

- Python
Published by JannesSP almost 2 years ago

read5_ont - 1.2.3

Added

• getPolyAStandardizedSignal(self, readid : str, polyAstart : int, polyAend : int) -> np.ndarray

Standardize the read signal of the provided read with the polyA. This function uses the median and mad to standardize the read with the polyA signal. After standardization the polyA signal will have a mean of 108.901413 and a stdev of 2.676522.

Parameter

readid : str polyAstart : int - included starting index of the polyA signal in the read

polyAend : int - excluded ending index of the polyA signal in the read

Returns

standardizedSignal : np.ndarray - polyA standardized read signal

- Python
Published by JannesSP almost 2 years ago

read5_ont - 1.2.2

Update pypi classifiers

- Python
Published by JannesSP over 2 years ago

read5_ont - 1.2.1

Created https://github.com/JannesSP/read5_ont without the slow5/pod5 support. But, Python3.11 support in conda

- Python
Published by JannesSP over 2 years ago