PTXQC - v1.1.3

What's Changed

• Maintenance fixes (DIA data etc) by @cbielow in https://github.com/cbielow/PTXQC/pull/138
• avoid clone() function to ensure compatibility with upcoming rmzqc by @cbielow in https://github.com/cbielow/PTXQC/pull/139

Full Changelog: https://github.com/cbielow/PTXQC/compare/v1.1.1...v1.1.3

- HTML
Published by cbielow 7 months ago

PTXQC - v1.1.1

[CRAN] v1.1.1 -- 2024/03/11 - compatibility with latest ggplot2 (v. 3.5.0) (pr #135)

Full Changelog: https://github.com/cbielow/PTXQC/compare/v1.1.0...v1.1.1

- HTML
Published by cbielow almost 2 years ago

PTXQC - v1.1.0

[CRAN] v1.1.0 -- 2023/12/16 - new DDA metric: frequencies of variable modifications per Raw file (pr #134)

- HTML
Published by cbielow about 2 years ago

PTXQC - v1.0.16

[CRAN] v1.00.16 -- 2023/05/17 - add MaxQuant 2.4 support (#130)

[CRAN] v1.00.15 -- 2023/04/23 - better reporter ion minimum range in violin plot (pr #124) - workaround for MQ bug causing negative scan index in msms_scan.txt (issue #128) - use 'rmzqc' package to handle mzQC output

- HTML
Published by cbielow almost 3 years ago

PTXQC - v1.0.14

• [FIX] crash when re-running PTX-QC on a txt folder where a (very old) PTX-QC was already run (issue https://github.com/cbielow/PTXQC/issues/118)
• [FIX] msmsScans TopNoverN metric showing invalid data for MaxQuant 2.x (issue https://github.com/cbielow/PTXQC/issues/119)
• [FEATURE] a better plot for TMT/iTRAQ reporter intensity (issue https://github.com/cbielow/PTXQC/issues/123)
• a few minor things (mainly CRAN docs)

- HTML
Published by cbielow over 3 years ago

PTXQC - v1.0.13

remove kableExtra dependency package (see https://github.com/cbielow/PTXQC/pull/116)

- HTML
Published by cbielow almost 4 years ago

PTXQC - v1.0.12

• [FIX] Documentation and cosmetic fixes (pr #109)
• [FIX/DOC] improved legends and better links in Html reports (pr #111)
• [FIX] crash on Raw files with only a single MSMS spectrum (pr #112)

- HTML
Published by cbielow over 4 years ago

PTXQC - v1.0.11

• initial support for mzQC Quality Control output (https://github.com/cbielow/PTXQC/pull/105)
• Missed cleavages can be computed from evidence.txt (https://github.com/cbielow/PTXQC/pull/104)
• minor fixes

- HTML
Published by cbielow over 4 years ago

PTXQC - v1.0.10: locale detection and bug-fixes

[CRAN] v1.0.10 -- 2021/05/29 - [FEATURE] detect if MaxQuant was run with wrong decimal separator (non UK/US locale) (issue #98) - [FIX] issue #97 Revive missing MBR metrics (introduced in PTXQC 1.0.9) - [FIX] issue #101 Restore full Parameter list showing MaxQuant parameters - [FIX] issue #102 Decoy distribution not shown in MS/MS mass error plot

- HTML
Published by cbielow over 4 years ago

PTXQC - v1.0.9: less warnings and log-file support

• [FEATURE] allow redirecting console output to file (#94)
• [FIX] reduce ggplot warnings
• [FEATURE] mzQC data type support (preliminary; no export yet)

- HTML
Published by cbielow about 5 years ago

PTXQC - v1.0.8: metric fixups

fixes issues #90 (Missed Cleavage plot missing, since 1.0.5) and #91 (Wrong heatmap score for MSMSScans:Intensity, since beginning of time)

- HTML
Published by cbielow about 5 years ago

PTXQC - v1.0.7: mzTab fixes and plotting fixes

see NEWS file for details.

- HTML
Published by cbielow over 5 years ago

PTXQC - v1.0.4: Improved mzTab support

support for iTRAQ/TMT MS2 labeled mzTab data (requires mzTab from OpenMS 2.6 pre-release -- see https://abibuilder.informatik.uni-tuebingen.de/archive/openms/OpenMSInstaller/nightly/ for downloads)

Some minor bugfixes -- see CHANGELOG.

MaxQuant txt folders work as always, no matter the MaxQuant version.

- HTML
Published by cbielow almost 6 years ago

PTXQC - v1.0.0: First release to support mzTab as input (eg from OpenMS)

see NEWS and README.md files

- HTML
Published by cbielow about 6 years ago

PTXQC - v0.92.3

see NEWS file

- HTML
Published by cbielow about 8 years ago

PTXQC - v0.80.3

• a lot of fixes, speed and memory improvements
• Html reports by default incl. descriptions for each metric and how to interpret them

- HTML
Published by cbielow almost 10 years ago

PTXQC - First release (JPR)

All core functionality is up and running. MaxQuant support from 1.0 to 1.5.

Unit testing framework is active. Vignettes are available. HTML reports are experimental.

- HTML
Published by cbielow over 10 years ago