Recent Releases of redundans
redundans - Redundans v2.0.1
What's Changed
- Changes required for Bioconda recipe by @Dfupa in https://github.com/Gabaldonlab/redundans/pull/102
Minor changes
- Improved some of binaries path
- Added LAST and merqury repositories snapshots to avoid versioning issues with bioconda-recipes
- Minor changes to README and stale_bot form Github Actions
Full Changelog: https://github.com/Gabaldonlab/redundans/compare/v2.00...v2.01
- C++
Published by Dfupa over 2 years ago
redundans - Redundans v2.00
What's Changed
- Redundans v2.00 update by @Dfupa in https://github.com/Gabaldonlab/redundans/pull/98
Major changes
- Complete Python3 support
- Performance mode (minimap2) or sensitivity mode (LASTal) for the reduction step
- Reworked long read scaffolding step: either generate a dirty assembly based on the long reads (miniasm) to do reference scaffolding or use a graph based algorithm for scaffolding
- Added K-mer composition spectra reporting plots (meryl and merqury)
Minor changes
- Added GFA as additional output
- Added an heterozygous contig report
- Updated docker image and docker file.
- Incorporated previous python submodules (FastaIndex, Pyscaf)
Contributors
- @Dfupa https://github.com/Gabaldonlab/redundans/pull/98
Full Changelog: https://github.com/Gabaldonlab/redundans/compare/v1.01...v2.00
- C++
Published by Dfupa over 2 years ago
redundans - Redundans v1.01
Archived 2016 release
Albeit late, this is the original Redundans v1.00 release from 2016 developed in Python2 with all the additional commits till now
What's Changed in v1.01
- Updated the snap-aligner binary to v2.0.1 in the .compile.sh
- Updated some documentation and help
- Securely pre-create log file, and honor $TMPDIR by @waoki in https://github.com/Gabaldonlab/redundans/pull/67
- C++
Published by Dfupa over 2 years ago