Recent Releases of pagoda2
pagoda2 - Version 1.0.13
Version 1.0.13 published on CRAN, 18 August 2025
- Fixing issues reported by CRAN associated with HTML Tidy
- JavaScript
Published by evanbiederstedt 6 months ago
pagoda2 - Version 1.0.12
Version 1.0.12 published on CRAN, 26 February 2024
- Makevars fixed
- README URL fixed for CRAN
- JavaScript
Published by evanbiederstedt about 2 years ago
pagoda2 - Version 1.0.11
Version 1.0.11 published on CRAN, 8 August 2023
- Minor bug fix for plotEmbedding, https://github.com/kharchenkolab/pagoda2/issues/139
- Remove C++11 flags
- JavaScript
Published by evanbiederstedt over 2 years ago
pagoda2 - Version 1.0.10
Version 1.0.10 published on CRAN, 19 April 2022
- Removed some lines used in local debugging; re-versioned
- JavaScript
Published by evanbiederstedt almost 4 years ago
pagoda2 - Version 1.0.9
Version 1.0.9 published on CRAN, 2 March 2022
- Fixed self$plotGeneHeatmap() to work with NA/NaN/Inf values
- Fixed bug with self$plotDiffGeneHeatmap(); access list elements
- Use
inherits()instead ofclass()comparisons for CRAN
- JavaScript
Published by evanbiederstedt almost 4 years ago
pagoda2 - Version 1.0.8
Version 1.0.8 published on CRAN, 12 December 2021
- Fixed self$plotGeneHeatmap() to work with NA/NaN/Inf values
- Fixed bug with self$plotDiffGeneHeatmap(); access list elements
- Use
inherits()instead ofclass()comparisons for CRAN
- JavaScript
Published by evanbiederstedt about 4 years ago
pagoda2 - Version 1.0.7
Version 1.0.7 published on CRAN, 15 November 2021
Changed * Added ability to export data in grids as *csv * Small revisions to docs
Fixed * Fixed issue with embedded YouTube tutorial in
- JavaScript
Published by evanbiederstedt over 4 years ago
pagoda2 - Version 1.0.6
Version 1.0.6 published on CRAN, 6 October 2021
Changed * Fixed read10xMatrix() to work with new 10x files * Replace Travis-CI with circleci
- JavaScript
Published by evanbiederstedt over 4 years ago
pagoda2 - Version 1.0.5
Version 1.0.5 published on CRAN, 11 August 2021
Changed * For CRAN, removed vignettes and dependency on the drat repository p2data: https://github.com/kharchenkolab/p2data
- JavaScript
Published by evanbiederstedt over 4 years ago
pagoda2 - Version 1.0.4
Version 1.0.4 published on CRAN, 29 June 2021
Changed
- Fixed
self$counts <- counts - Fixed
Knn()inpagoda2WebApp.R
- JavaScript
Published by evanbiederstedt over 4 years ago
pagoda2 - Version 1.0.3
Published on CRAN 3 May 2021
- Removed
jsDist()as it's in sccore - Removed
multi2dend()as it's in sccore - Removed strong dependency for p2data
- JavaScript
Published by evanbiederstedt almost 5 years ago
pagoda2 - Version 1.0.2
- Revised vignettes figures for the HTML tutorial. Figure sizes modified to be more uniform.
Version published on CRAN, 4 March 2021: https://cran.r-project.org/web/packages/pagoda2/index.html
- JavaScript
Published by evanbiederstedt almost 5 years ago
pagoda2 - Version 1.0.1
Added
- Returned copy constructor
Changed
- Fixed
read10xMatrix()function - Updated Dockerfile
- Fixed 'batch' param in Pagoda2 constructor
Version 1.0.1 published on CRAN on Feb 23 2021, https://cran.r-project.org/web/packages/pagoda2/index.html
- JavaScript
Published by evanbiederstedt about 5 years ago
pagoda2 - Version 1.0.0
Pagoda2 is now on CRAN, and all binaries are built: https://cran.r-project.org/web/packages/pagoda2/index.html
- The classes
Pagoda2()andp2ViewPagodaApp()are now R6 classes; notepagoda2WebApp()is still a reference class as it depends on Rook - Vignettes revised
- Use p2data and drat to install PBMC data for pagoda2 vignettes and examples. This was largely due to the size of the data and CRAN rules. Refer to https://github.com/kharchenkolab/p2data & https://github.com/kharchenkolab/drat
- revise
message()spacing for verbose statements - various changes for CRAN, e.g.
par(), removing calls toinstalled.packages(), etc. p2app4conos()moved to conos- more detailed roxygen2 docs
- JavaScript
Published by evanbiederstedt about 5 years ago
pagoda2 - Version 0.1.4
- added
p2app4conos()for rendering Conos to pagoda2 application - README edits
- vignettes edits
- JavaScript
Published by evanbiederstedt over 5 years ago
pagoda2 - Version 0.1.3
- Makefile.win, Makevars.win
- Made OpenMP headers conditional
- Now should (natively) install on Mac OS for all users
- JavaScript
Published by evanbiederstedt over 5 years ago
pagoda2 - Version 0.1.2
Changed -- vignettes revisions -- install pagoda2 in one go via biocViews -- log10 scaling for plots -- windows installation -- updates for CRAN -- DESCRIPTION edits
- JavaScript
Published by evanbiederstedt over 5 years ago