Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
1 of 5 committers (20.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (3.1%) to scientific vocabulary
Last synced: 10 months ago
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JSON representation
Repository
Simplifies parallel processing of DNA sequencing reads
Basic Info
- Host: GitHub
- Owner: databio
- License: bsd-2-clause
- Language: Python
- Default Branch: master
- Homepage: https://pararead.databio.org
- Size: 296 KB
Statistics
- Stars: 9
- Watchers: 6
- Forks: 2
- Open Issues: 2
- Releases: 8
Created over 9 years ago
· Last pushed almost 2 years ago
Metadata Files
Readme
Contributing
License
Support
README.md
Pararead: parallel processing of sequencing reads
A python package that simplifies parallel processing of DNA sequencing reads (BAM or SAM files), by parallelizing across chromosomes. The best place to learn more is at the documentation.
Owner
- Name: Databio
- Login: databio
- Kind: organization
- Location: University of Virginia
- Website: https://databio.org
- Repositories: 88
- Profile: https://github.com/databio
Solving problems in computational biology
GitHub Events
Total
Last Year
Committers
Last synced: 12 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Vince Reuter | v****r@g****m | 90 |
| nsheff | n****f | 45 |
| Khoroshevskyi | s****0@g****m | 10 |
| Jason Smith | j****h@v****u | 2 |
| Donald Campbell | 1****r | 2 |
Committer Domains (Top 20 + Academic)
virginia.edu: 1
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 19
- Total pull requests: 26
- Average time to close issues: 4 months
- Average time to close pull requests: 8 days
- Total issue authors: 5
- Total pull request authors: 3
- Average comments per issue: 2.63
- Average comments per pull request: 0.92
- Merged pull requests: 25
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 1
- Average time to close issues: about 23 hours
- Average time to close pull requests: about 3 hours
- Issue authors: 1
- Pull request authors: 1
- Average comments per issue: 2.0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- nsheff (9)
- vreuter (7)
- mbassalbioinformatics (1)
- gmicevic (1)
- caleblareau (1)
Pull Request Authors
- vreuter (17)
- nsheff (8)
- khoroshevskyi (2)
Top Labels
Issue Labels
bug (5)
enhancement (1)
docs (1)
API (1)
MasterTicket (1)
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- pypi 51 last-month
- Total docker downloads: 90
- Total dependent packages: 1
- Total dependent repositories: 3
- Total versions: 5
- Total maintainers: 4
pypi.org: pararead
Parallel processing of sequencing reads
- Homepage: https://github.com/databio/pararead
- Documentation: https://pararead.readthedocs.io/
- License: BSD2
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Latest release: 0.8.0
published almost 2 years ago
Rankings
Docker downloads count: 2.8%
Dependent packages count: 4.7%
Dependent repos count: 9.0%
Average: 11.6%
Downloads: 15.6%
Stargazers count: 18.5%
Forks count: 19.1%
Maintainers (4)
Last synced:
11 months ago
Dependencies
requirements/requirements-docs.txt
pypi
- pararead *
requirements/requirements-test.txt
pypi
- coveralls ==1.1 test
- pytest * test
- pytest-cov ==2.4.0 test
requirements/requirements.txt
pypi
- pysam >=0.13
- ubiquerg >=0.4.5