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bpp

Estimate pairwise sequence distances by maximum likelihood

https://github.com/kgori/bpp

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 3 committers (66.7%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (1.5%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Estimate pairwise sequence distances by maximum likelihood

Basic Info
  • Host: GitHub
  • Owner: kgori
  • License: other
  • Language: C++
  • Default Branch: master
  • Size: 1.16 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Created almost 12 years ago · Last pushed over 10 years ago
Metadata Files
Readme License

README.md

bpp

Estimate pairwise sequence distances by maximum likelihood, along with neighbour-joining and ML trees. Simulate alignments from ML models. Requires the libraries core, seq and phyl to be installed from Bio++. Documentation to follow.

Owner

  • Name: Kevin Gori
  • Login: kgori
  • Kind: user

GitHub Events

Total
Last Year

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 62
  • Total Committers: 3
  • Avg Commits per committer: 20.667
  • Development Distribution Score (DDS): 0.048
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Kevin Gori k****i@e****k 59
Kevin Gori k****i@C****l 2
Kevin Gori k****i@c****k 1
Committer Domains (Top 20 + Academic)
cubistcastle.windows.ebi.ac.uk: 1 ebi.ac.uk: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 23 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 2
  • Total versions: 15
  • Total maintainers: 1
pypi.org: bpp

Pairwise distances by maximum likelihood

  • Versions: 15
  • Dependent Packages: 0
  • Dependent Repositories: 2
  • Downloads: 23 Last month
Rankings
Dependent packages count: 10.0%
Dependent repos count: 11.6%
Average: 22.0%
Forks count: 22.6%
Downloads: 26.7%
Stargazers count: 38.8%
Maintainers (1)
kgori
Last synced: 10 months ago

Dependencies

setup.py pypi
  • autowrap *
  • cython *