brainlit
Method container for computational neuroscience on brains.
Science Score: 33.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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✓Academic publication links
Links to: zenodo.org -
✓Committers with academic emails
7 of 31 committers (22.6%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (14.4%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Method container for computational neuroscience on brains.
Basic Info
- Host: GitHub
- Owner: neurodata
- License: other
- Language: Python
- Default Branch: develop
- Homepage: http://brainlit.neurodata.io/
- Size: 1.93 GB
Statistics
- Stars: 29
- Watchers: 5
- Forks: 17
- Open Issues: 78
- Releases: 6
Topics
Metadata Files
README.md
Brainlit
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Summary
This repository is used for various tasks in processing, and analyzing light microscopy images of brains for the purpose of studing neuron morphology. Documentation can be found here.
Brainlit is a product of the neurodata lab and the Neuro Data Design course. It is actively maintained by Thomas Athey (@tathey1). We strive to follow the same code of conduct that applies to the Microsoft open source community.
Contributing and Questions
We welcome all contributors, and encourage them to follow our contribution guidelines gound in CONTRIBUTING.md. Issues with the "good first issue" tag are meant for contributors that are either new to open source coding, or new to the package. Additionally, users are encouraged to use issues not only to discuss code-related problems, but for more general discussions or questions about the package.
Owner
- Name: neurodata
- Login: neurodata
- Kind: organization
- Email: admin@neurodata.io
- Location: everywhere
- Website: https://neurodata.io
- Repositories: 175
- Profile: https://github.com/neurodata
GitHub Events
Total
- Watch event: 1
- Member event: 1
- Push event: 6
Last Year
- Watch event: 1
- Member event: 1
- Push event: 6
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Thomas Athey | t****y@g****m | 1,768 |
| bvarjavand | b****d@g****m | 308 |
| Felix Chen | c****w@g****m | 175 |
| TanchyKing | 3****g | 90 |
| fxu10 | f****0@j****u | 53 |
| alishakodibagkar | a****r@g****m | 52 |
| ryanlu41 | r****1@g****m | 50 |
| Jacopo Teneggi | j****1@j****u | 47 |
| shreyasingh1 | s****0@g****m | 46 |
| John D'Uva | j****3@g****m | 42 |
| Jenny Trieu | j****0@g****m | 38 |
| sejalsrivastava1 | s****3@g****m | 38 |
| sanika1201 | 5****1 | 36 |
| AF1111 | a****1@j****u | 30 |
| Jacopo Teneggi | j****i@j****m | 30 |
| Matthew Figdore | m****1@j****u | 27 |
| Casey Weiner | 5****r | 16 |
| Devin Crowley | d****y@g****m | 10 |
| koienshi | 5****i | 6 |
| Haoyin Xu | h****u@g****m | 5 |
| dependabot[bot] | 4****] | 5 |
| shreyasingh1 | 4****1 | 5 |
| Meikah101 | m****5@g****m | 4 |
| alishakodibagkar | a****r@A****l | 4 |
| Bijan Varjavand | b****1@i****u | 3 |
| SUKI | I****2@g****m | 2 |
| VannieXu | 5****u | 2 |
| tathey1 | t****y@g****m | 2 |
| dallen | d****n@l****u | 2 |
| Vikram Chandrashekhar | v****c@j****u | 2 |
| and 1 more... | ||
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 7 months ago
All Time
- Total issues: 39
- Total pull requests: 95
- Average time to close issues: over 1 year
- Average time to close pull requests: about 1 month
- Total issue authors: 11
- Total pull request authors: 10
- Average comments per issue: 2.31
- Average comments per pull request: 1.02
- Merged pull requests: 74
- Bot issues: 0
- Bot pull requests: 2
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- tathey1 (23)
- bvarjavand (4)
- mlemyco (2)
- johnduva (2)
- ryanlu41 (2)
- vikramc1 (1)
- alishakodibagkar (1)
- anorak94 (1)
- fxu10 (1)
- mfigdore (1)
- dallen02 (1)
Pull Request Authors
- tathey1 (81)
- JacopoTeneggi (3)
- dependabot[bot] (3)
- bvarjavand (1)
- shreyasingh1 (1)
- CaseyWeiner (1)
- dallen02 (1)
- Swarnlataaa (1)
- sejalsrivastava1 (1)
- mlemyco (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- pypi 44 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 11
- Total maintainers: 2
pypi.org: brainlit
Code to process and analyze brainlit data
- Homepage: https://github.com/neurodata/brainlit
- Documentation: https://brainlit.readthedocs.io/
- License: Apache License 2.0
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Latest release: 0.3.6
published almost 3 years ago
Rankings
Maintainers (2)
Dependencies
- actions/checkout v2 composite
- psf/black stable composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- actions/stale v5 composite
- python 3.8-slim-buster build
- Jinja2 ==2.11.3
- ipykernel ==5.3.4
- ipython ==8.10.0
- markupsafe ==2.0.1
- nbsphinx ==0.8.0
- numpydoc ==1.1.0
- setuptools >=41.2.0
- sphinx ==3.3.0
- sphinx-autoapi ==1.5.1
- sphinx-autodoc-typehints ==1.11.1
- sphinx-rtd-theme ==0.5.0
- sphinxcontrib-rawfiles ==0.1.1