UpSetR - Release v1.4.0

• Allow custom y-axis label and scale
• Keep spaces in set names when filling empty intersections
• fixed bug for single set (degree of 1) intersection query when using fromExpression
• Changed point shape to 16
• Include set_size.show paramter and added documentation

- R
Published by JakeConway almost 7 years ago

UpSetR - Release v1.3.3

• Made element query compatible with check.names
• Removed border from active query bars
• Adjusted metadata heatmap and text title positions (centered title and removed 90 degree rotation)

- R
Published by JakeConway almost 9 years ago

UpSetR - Release v1.3.2

• update logarithmic axis and bar labels
• allow decimal values for log scales
• set intersection size axis min to 0 for log scales

- R
Published by JakeConway about 9 years ago

UpSetR - Release v1.3.1

• Fixed log scale bugs
• Allow users to label their own queries, which can be displayed in query legend
• Fixed query legend positioning bug. Allows query legend to be placed on top or bottom of plot grid
• Fixed warnings and notes from new ggplot2 release
• Updated plot margin of intersection size bar plot

- R
Published by JakeConway over 9 years ago

UpSetR - Release v1.3.0

• Introduce text scales for all plot axis labels, tick labels, set names, and numbers above the bars
• Remove names.size parameter and replace with a text scale
• Fix vignettes so plot size and text is appropriately scaled

- R
Published by JakeConway over 9 years ago

UpSetR - Release v1.2.4

• Fix check.names bug so that it reorders the set size bar plot, not just the set labels
• Show all intersections when nintersects is set to NA

- R
Published by JakeConway over 9 years ago

UpSetR - Release v1.2.3

• Allow user to keep order of sets entered when using sets parameter
• Updated Basic Usage vignette with example on how to do this

- R
Published by JakeConway over 9 years ago

UpSetR - Release v1.2.2

• Support for log10 and log2 scale transformations

- R
Published by JakeConway over 9 years ago

UpSetR - Release v1.2.1

• Updated vignettes
• Adjusted metadata plot text size for ggplot2 update
• Default gray88 color if matrix_rows metadata attribute used and no colors supplied
• Fixed metadata error so that matrix_rows may be used alone
• New link to UpSetR Shiny app in README

- R
Published by JakeConway over 9 years ago

UpSetR - Release v1.2.0

• Options for set metadata heat map, boolean heat map, text, and bar plot
• Allow for multiple set metadata plots
• Option to color matrix background using metadata
• Created set.metadata.plots vignette
• Removed set metadata example from attribute.plots vignette

- R
Published by JakeConway almost 10 years ago

UpSetR - Release v1.1.1

• Added selective import from plyr package to avoid warning from gridExtra package update (requested by CRAN)

- R
Published by JakeConway almost 10 years ago

UpSetR - Release v1.1.0

• Added set metadata plot feature
• Added intersections parameter to include only intersections specified
• Reorder sets when using sets or intersections parameter
• Add label option for intersection size and size size bar plots
• Include boxplot summary example in attribute vignette
• Added setmetadata example in attribute vignette and label parameter examples to basic usage vignette

- R
Published by JakeConway almost 10 years ago

UpSetR - Release v1.0.3

• Fixed overlapping between matrix and intersection size bar plot (caused by late changes to ggplot2 update)
• Updated vignettes to regenerate plots from new code

- R
Published by JakeConway about 10 years ago

UpSetR - Release v1.0.2

• Updated vignettes to include examples of the fromExpression and fromList functions
• Changed to selective imports from grid package

- R
Published by JakeConway about 10 years ago

UpSetR - Release v1.0.1

• Fixed matrix plot to work correctly with new ggplot2 update

- R
Published by JakeConway about 10 years ago

UpSetR - Release v1.0.0

• Added directionality when choosing sets (-1,0,+1)
• Allowed for NA's in non-set columns
• Added increasing/decreasing options for ordering intersections
• Added fromList to convert a list of named vectors to an UpSetR data frame
• Added fromExpression to convert a vector acting as an expression to an UpSetR data frame
• Updated vignette for alternative input formats (list & expression)

- R
Published by JakeConway over 10 years ago

UpSetR - Release v0.0.5

• Compatible with all gridExtra version
• Added vignettes
• Updated element query features

- R
Published by JakeConway over 10 years ago

UpSetR - Release v0.0.4

• change aes to aes_string

- R
Published by JakeConway over 10 years ago

UpSetR - v0.0.3 Release

• Updated package to suit CRAN policies

- R
Published by JakeConway over 10 years ago

UpSetR - v0.0.2 Release

• Renamed custom.plots as attribute.plots to better fit its purpose.
• Re-added query legend option when user selects for attribute plots
• Lowered minimum required R version.
• Allowed for 360 degree rotation of intersection size bar labels
• Changed default color of matrix shaing from dodgerblue to light gray

- R
Published by JakeConway over 10 years ago

UpSetR - Initial release.

This is the first public release of the UpSetR package.

- R
Published by ngehlenborg over 10 years ago