metacells - v0.9.4

• Fix minor bug in regularization of metacell fractions.
• Fix issue with canonical sparse matrices after downsampling (probably due to scipy.sparse updates?)
• Fix using deprecated AnnData APIs.

- Python
Published by orenbenkiki over 2 years ago

metacells - v0.9.3

Allow specifying both target UMIs and target size (in cells) for the metacells, and adaptively try to satisfy both. This should produce better-sized metacells "out of the box" compared to 0.9.[0-2].

- Python
Published by orenbenkiki almost 3 years ago

metacells - v0.9.2

• Fix numpy compatibility issue.
• Fix K of UMAP skeleton KNN graph (broken in 0.9.1).

- Python
Published by orenbenkiki almost 3 years ago

metacells - v0.9.1

• Fix build for python 3.11.
• More robust gene selection, KNN graph creation, and metacells partition.
• More thorough binary wheels.

- Python
Published by orenbenkiki almost 3 years ago

metacells - v0.9.0

• Improved and published projection algorithm.
• Restrict number of rare gene candidates.
• Tighter control over metacells size and internal quality.
• Improved divide-and-conquer strategy.
• Base deviants (outliers) on gaps between cells.
• Terminology changes (see the README for details).

- Python
Published by orenbenkiki almost 3 years ago

metacells - v0.8.0

- Python
Published by orenbenkiki over 4 years ago